Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147608

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1147608 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP023116	SRP023116_M25	Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing	Methylome	Female pronucleus (Zygote)	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000098516	Mir7651	microRNA 7651	7.2798	0.0000
2	ENSMUSG00000085025	Gm13715	predicted gene 13715	7.2479	0.0000
3	ENSMUSG00000010797	Wnt2	wingless-type MMTV integration site family, member 2	7.1204	0.0000
4	ENSMUSG00000033955	Tnks1bp1	tankyrase 1 binding protein 1	7.0625	0.0000
5	ENSMUSG00000096992	Gm26788	predicted gene, 26788	7.0381	0.0000
6	ENSMUSG00000068324	Gm10029	predicted gene 10029	6.9658	0.0000
7	ENSMUSG00000067835	Gm14661	predicted gene 14661	6.9410	0.0000
8	ENSMUSG00000064558	Gm24620	predicted gene, 24620	6.8948	0.0000
9	ENSMUSG00000084052	Gm11745	predicted gene 11745	6.8291	0.0000
10	ENSMUSG00000041794	Myrip	myosin VIIA and Rab interacting protein	6.5545	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000058546	Rpl23a	ribosomal protein L23A	-3.5293	0.0000
47080	ENSMUSG00000019845	Tube1	tubulin, epsilon 1	-3.5276	0.0238
47079	ENSMUSG00000000881	Dlg3	discs large MAGUK scaffold protein 3	-3.5272	0.0000
47078	ENSMUSG00000046997	Spsb4	splA/ryanodine receptor domain and SOCS box containing 4	-3.5261	0.0000
47077	ENSMUSG00000052684	Jun	jun proto-oncogene	-3.5261	0.0000
47076	ENSMUSG00000020857	Nme2	NME/NM23 nucleoside diphosphate kinase 2	-3.5256	0.0000
47075	ENSMUSG00000037573	Tob1	transducer of ErbB-2.1	-3.5256	0.0000
47074	ENSMUSG00000043857	Mgat5b	mannoside acetylglucosaminyltransferase 5, isoenzyme B	-3.5255	0.0029
47073	ENSMUSG00000047884	Klk9	kallikrein related-peptidase 9	-3.5246	0.0017
47072	ENSMUSG00000022828	Gtf2e1	general transcription factor II E, polypeptide 1 (alpha subunit)	-3.5245	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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