Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM1147608
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147608
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP023116
SRP023116_M25
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Female pronucleus (Zygote)
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000098516
Mir7651
microRNA 7651
7.2798
0.0000
2
ENSMUSG00000085025
Gm13715
predicted gene 13715
7.2479
0.0000
3
ENSMUSG00000010797
Wnt2
wingless-type MMTV integration site family, member 2
7.1204
0.0000
4
ENSMUSG00000033955
Tnks1bp1
tankyrase 1 binding protein 1
7.0625
0.0000
5
ENSMUSG00000096992
Gm26788
predicted gene, 26788
7.0381
0.0000
6
ENSMUSG00000068324
Gm10029
predicted gene 10029
6.9658
0.0000
7
ENSMUSG00000067835
Gm14661
predicted gene 14661
6.9410
0.0000
8
ENSMUSG00000064558
Gm24620
predicted gene, 24620
6.8948
0.0000
9
ENSMUSG00000084052
Gm11745
predicted gene 11745
6.8291
0.0000
10
ENSMUSG00000041794
Myrip
myosin VIIA and Rab interacting protein
6.5545
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000058546
Rpl23a
ribosomal protein L23A
-3.5293
0.0000
47080
ENSMUSG00000019845
Tube1
tubulin, epsilon 1
-3.5276
0.0238
47079
ENSMUSG00000000881
Dlg3
discs large MAGUK scaffold protein 3
-3.5272
0.0000
47078
ENSMUSG00000046997
Spsb4
splA/ryanodine receptor domain and SOCS box containing 4
-3.5261
0.0000
47077
ENSMUSG00000052684
Jun
jun proto-oncogene
-3.5261
0.0000
47076
ENSMUSG00000020857
Nme2
NME/NM23 nucleoside diphosphate kinase 2
-3.5256
0.0000
47075
ENSMUSG00000037573
Tob1
transducer of ErbB-2.1
-3.5256
0.0000
47074
ENSMUSG00000043857
Mgat5b
mannoside acetylglucosaminyltransferase 5, isoenzyme B
-3.5255
0.0029
47073
ENSMUSG00000047884
Klk9
kallikrein related-peptidase 9
-3.5246
0.0017
47072
ENSMUSG00000022828
Gtf2e1
general transcription factor II E, polypeptide 1 (alpha subunit)
-3.5245
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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