Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147608

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147608


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M25Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFemale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000098516 Mir7651 microRNA 7651 7.2798 0.0000
2 ENSMUSG00000085025 Gm13715 predicted gene 13715 7.2479 0.0000
3 ENSMUSG00000010797 Wnt2 wingless-type MMTV integration site family, member 2 7.1204 0.0000
4 ENSMUSG00000033955 Tnks1bp1 tankyrase 1 binding protein 1 7.0625 0.0000
5 ENSMUSG00000096992 Gm26788 predicted gene, 26788 7.0381 0.0000
6 ENSMUSG00000068324 Gm10029 predicted gene 10029 6.9658 0.0000
7 ENSMUSG00000067835 Gm14661 predicted gene 14661 6.9410 0.0000
8 ENSMUSG00000064558 Gm24620 predicted gene, 24620 6.8948 0.0000
9 ENSMUSG00000084052 Gm11745 predicted gene 11745 6.8291 0.0000
10 ENSMUSG00000041794 Myrip myosin VIIA and Rab interacting protein 6.5545 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000058546 Rpl23a ribosomal protein L23A -3.5293 0.0000
47080 ENSMUSG00000019845 Tube1 tubulin, epsilon 1 -3.5276 0.0238
47079 ENSMUSG00000000881 Dlg3 discs large MAGUK scaffold protein 3 -3.5272 0.0000
47078 ENSMUSG00000046997 Spsb4 splA/ryanodine receptor domain and SOCS box containing 4 -3.5261 0.0000
47077 ENSMUSG00000052684 Jun jun proto-oncogene -3.5261 0.0000
47076 ENSMUSG00000020857 Nme2 NME/NM23 nucleoside diphosphate kinase 2 -3.5256 0.0000
47075 ENSMUSG00000037573 Tob1 transducer of ErbB-2.1 -3.5256 0.0000
47074 ENSMUSG00000043857 Mgat5b mannoside acetylglucosaminyltransferase 5, isoenzyme B -3.5255 0.0029
47073 ENSMUSG00000047884 Klk9 kallikrein related-peptidase 9 -3.5246 0.0017
47072 ENSMUSG00000022828 Gtf2e1 general transcription factor II E, polypeptide 1 (alpha subunit) -3.5245 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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