Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147609

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147609


Profile download
7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M26Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeMale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000084048 Gm12042 predicted gene 12042 5.5655 0.0000
2 ENSMUSG00000112677 Gm48868 predicted gene, 48868 5.5546 0.0000
3 ENSMUSG00000085936 2610307P16Rik RIKEN cDNA 2610307P16 gene 5.4290 0.0000
4 ENSMUSG00000103095 Gm37557 predicted gene, 37557 5.3576 0.0000
5 ENSMUSG00000082871 Gm13263 predicted gene 13263 5.2854 0.0000
6 ENSMUSG00000062190 Lancl2 LanC (bacterial lantibiotic synthetase component C)-like 2 5.2095 0.0000
7 ENSMUSG00000057037 Cfhr1 complement factor H-related 1 5.0986 0.0000
8 ENSMUSG00000087345 Gm13746 predicted gene 13746 5.0875 0.0000
9 ENSMUSG00000020100 Slc29a3 solute carrier family 29 (nucleoside transporters), member 3 5.0444 0.0000
10 ENSMUSG00000031651 Triml1 tripartite motif family-like 1 5.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000002981 Clptm1 cleft lip and palate associated transmembrane protein 1 -3.3067 0.0074
47080 ENSMUSG00000082332 Gm13384 predicted gene 13384 -3.3063 0.0000
47079 ENSMUSG00000090009 Gm16282 predicted gene 16282 -3.3063 0.1737
47078 ENSMUSG00000089800 Rps19-ps10 ribosomal protein S19, pseudogene 10 -3.3052 0.0000
47077 ENSMUSG00000038624 Nepn nephrocan -3.3052 0.0000
47076 ENSMUSG00000022629 Kif21a kinesin family member 21A -3.3051 0.0000
47075 ENSMUSG00000053950 Adnp2 ADNP homeobox 2 -3.3050 0.0232
47074 ENSMUSG00000028465 Tln1 talin 1 -3.3048 0.0000
47073 ENSMUSG00000081647 Gm13022 predicted gene 13022 -3.3048 0.0006
47072 ENSMUSG00000109945 Gm45601 predicted gene 45601 -3.3044 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...