SHOGoiN Cell Methylome: GSM1200272

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1200272


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M28Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000081208 Gm11400 predicted gene 11400 7.8658 0.0000
2 ENSMUSG00000078130 Gm11555 predicted gene 11555 7.7211 0.0000
3 ENSMUSG00000004612 Nkg7 natural killer cell group 7 sequence 7.6265 0.0000
4 ENSMUSG00000038973 Cldnd2 claudin domain containing 2 7.6265 0.0000
5 ENSMUSG00000046034 Otulin OTU deubiquitinase with linear linkage specificity 7.5925 0.0000
6 ENSMUSG00000066368 Actl11 actin-like 11 7.5924 0.0000
7 ENSMUSG00000053769 Lysmd1 LysM, putative peptidoglycan-binding, domain containing 1 7.4388 0.0000
8 ENSMUSG00000092607 Scnm1 sodium channel modifier 1 7.4388 0.0000
9 ENSMUSG00000098498 Mir8099-1 microRNA 8099-1 7.4388 0.0000
10 ENSMUSG00000105291 Gm18901 predicted gene, 18901 7.2384 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000018654 Ikzf1 IKAROS family zinc finger 1 -6.1391 0.0000
50853 ENSMUSG00000067873 Htatsf1 HIV TAT specific factor 1 -6.1360 0.0000
50852 ENSMUSG00000106062 Gm43820 predicted gene 43820 -6.1359 0.0000
50851 ENSMUSG00000083332 Gm7599 predicted gene 7599 -6.1352 0.0000
50850 ENSMUSG00000024430 Cabyr calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) -6.1352 0.0000
50849 ENSMUSG00000110569 Gm18860 predicted gene, 18860 -6.1341 0.0000
50848 ENSMUSG00000031803 B3gnt3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 -6.1341 0.0000
50847 ENSMUSG00000087791 Gm25969 predicted gene, 25969 -6.1330 0.0000
50846 ENSMUSG00000107640 Gm38804 predicted gene, 38804 -6.1274 0.0000
50845 ENSMUSG00000053297 AI854703 expressed sequence AI854703 -6.1274 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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