Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM1200272
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1200272
Profile download
5090101000001000000000-236
Sequence Read Archive
SRP023116
SRP023116_M28
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Sperm
Mouse
Genitalia
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000081208
Gm11400
predicted gene 11400
7.8658
0.0000
2
ENSMUSG00000078130
Gm11555
predicted gene 11555
7.7211
0.0000
3
ENSMUSG00000004612
Nkg7
natural killer cell group 7 sequence
7.6265
0.0000
4
ENSMUSG00000038973
Cldnd2
claudin domain containing 2
7.6265
0.0000
5
ENSMUSG00000046034
Otulin
OTU deubiquitinase with linear linkage specificity
7.5925
0.0000
6
ENSMUSG00000066368
Actl11
actin-like 11
7.5924
0.0000
7
ENSMUSG00000053769
Lysmd1
LysM, putative peptidoglycan-binding, domain containing 1
7.4388
0.0000
8
ENSMUSG00000092607
Scnm1
sodium channel modifier 1
7.4388
0.0000
9
ENSMUSG00000098498
Mir8099-1
microRNA 8099-1
7.4388
0.0000
10
ENSMUSG00000105291
Gm18901
predicted gene, 18901
7.2384
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000019777
Hdac2
histone deacetylase 2
-3.0220
0.0000
47080
ENSMUSG00000038201
Kcna7
potassium voltage-gated channel, shaker-related subfamily, member 7
-3.0216
0.0000
47079
ENSMUSG00000097010
Gm26709
predicted gene, 26709
-3.0208
0.0000
47077
ENSMUSG00000040524
Zfp609
zinc finger protein 609
-3.0192
0.0000
47076
ENSMUSG00000021557
Agtpbp1
ATP/GTP binding protein 1
-3.0164
0.0000
47075
ENSMUSG00000058046
4933430I17Rik
RIKEN cDNA 4933430I17 gene
-3.0130
0.0178
47074
ENSMUSG00000028394
Pole3
polymerase (DNA directed), epsilon 3 (p17 subunit)
-3.0130
0.0178
47073
ENSMUSG00000041225
Arhgap12
Rho GTPase activating protein 12
-3.0129
0.0000
47072
ENSMUSG00000021461
Fancc
Fanconi anemia, complementation group C
-3.0114
0.0000
10
ENSMUSG00000105291
Gm18901
predicted gene, 18901
7.2384
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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