Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1200272

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1200272 Profile download	5090101000001000000000-236	Sequence Read Archive	SRP023116	SRP023116_M28	Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing	Methylome	Sperm	Mouse	Genitalia	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000081208	Gm11400	predicted gene 11400	7.8658	0.0000
2	ENSMUSG00000078130	Gm11555	predicted gene 11555	7.7211	0.0000
3	ENSMUSG00000004612	Nkg7	natural killer cell group 7 sequence	7.6265	0.0000
4	ENSMUSG00000038973	Cldnd2	claudin domain containing 2	7.6265	0.0000
5	ENSMUSG00000046034	Otulin	OTU deubiquitinase with linear linkage specificity	7.5925	0.0000
6	ENSMUSG00000066368	Actl11	actin-like 11	7.5924	0.0000
7	ENSMUSG00000053769	Lysmd1	LysM, putative peptidoglycan-binding, domain containing 1	7.4388	0.0000
8	ENSMUSG00000092607	Scnm1	sodium channel modifier 1	7.4388	0.0000
9	ENSMUSG00000098498	Mir8099-1	microRNA 8099-1	7.4388	0.0000
10	ENSMUSG00000105291	Gm18901	predicted gene, 18901	7.2384	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000019777	Hdac2	histone deacetylase 2	-3.0220	0.0000
47080	ENSMUSG00000038201	Kcna7	potassium voltage-gated channel, shaker-related subfamily, member 7	-3.0216	0.0000
47079	ENSMUSG00000097010	Gm26709	predicted gene, 26709	-3.0208	0.0000
47077	ENSMUSG00000040524	Zfp609	zinc finger protein 609	-3.0192	0.0000
47076	ENSMUSG00000021557	Agtpbp1	ATP/GTP binding protein 1	-3.0164	0.0000
47075	ENSMUSG00000058046	4933430I17Rik	RIKEN cDNA 4933430I17 gene	-3.0130	0.0178
47074	ENSMUSG00000028394	Pole3	polymerase (DNA directed), epsilon 3 (p17 subunit)	-3.0130	0.0178
47073	ENSMUSG00000041225	Arhgap12	Rho GTPase activating protein 12	-3.0129	0.0000
47072	ENSMUSG00000021461	Fancc	Fanconi anemia, complementation group C	-3.0114	0.0000
10	ENSMUSG00000105291	Gm18901	predicted gene, 18901	7.2384	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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