Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1200272

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1200272


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M28Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000081208 Gm11400 predicted gene 11400 7.8658 0.0000
2 ENSMUSG00000078130 Gm11555 predicted gene 11555 7.7211 0.0000
3 ENSMUSG00000004612 Nkg7 natural killer cell group 7 sequence 7.6265 0.0000
4 ENSMUSG00000038973 Cldnd2 claudin domain containing 2 7.6265 0.0000
5 ENSMUSG00000046034 Otulin OTU deubiquitinase with linear linkage specificity 7.5925 0.0000
6 ENSMUSG00000066368 Actl11 actin-like 11 7.5924 0.0000
7 ENSMUSG00000053769 Lysmd1 LysM, putative peptidoglycan-binding, domain containing 1 7.4388 0.0000
8 ENSMUSG00000092607 Scnm1 sodium channel modifier 1 7.4388 0.0000
9 ENSMUSG00000098498 Mir8099-1 microRNA 8099-1 7.4388 0.0000
10 ENSMUSG00000105291 Gm18901 predicted gene, 18901 7.2384 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000019777 Hdac2 histone deacetylase 2 -3.0220 0.0000
47080 ENSMUSG00000038201 Kcna7 potassium voltage-gated channel, shaker-related subfamily, member 7 -3.0216 0.0000
47079 ENSMUSG00000097010 Gm26709 predicted gene, 26709 -3.0208 0.0000
47077 ENSMUSG00000040524 Zfp609 zinc finger protein 609 -3.0192 0.0000
47076 ENSMUSG00000021557 Agtpbp1 ATP/GTP binding protein 1 -3.0164 0.0000
47075 ENSMUSG00000058046 4933430I17Rik RIKEN cDNA 4933430I17 gene -3.0130 0.0178
47074 ENSMUSG00000028394 Pole3 polymerase (DNA directed), epsilon 3 (p17 subunit) -3.0130 0.0178
47073 ENSMUSG00000041225 Arhgap12 Rho GTPase activating protein 12 -3.0129 0.0000
47072 ENSMUSG00000021461 Fancc Fanconi anemia, complementation group C -3.0114 0.0000
10 ENSMUSG00000105291 Gm18901 predicted gene, 18901 7.2384 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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