SHOGoiN Cell Methylome: GSM1200272
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1200272 Profile download | 5090101000001000000000-236 | Sequence Read Archive | SRP023116 | SRP023116_M28 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Sperm | Mouse | Genitalia | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000081208 | Gm11400 | predicted gene 11400 | 7.8658 | 0.0000 |
| 2 | ENSMUSG00000078130 | Gm11555 | predicted gene 11555 | 7.7211 | 0.0000 |
| 3 | ENSMUSG00000004612 | Nkg7 | natural killer cell group 7 sequence | 7.6265 | 0.0000 |
| 4 | ENSMUSG00000038973 | Cldnd2 | claudin domain containing 2 | 7.6265 | 0.0000 |
| 5 | ENSMUSG00000046034 | Otulin | OTU deubiquitinase with linear linkage specificity | 7.5925 | 0.0000 |
| 6 | ENSMUSG00000066368 | Actl11 | actin-like 11 | 7.5924 | 0.0000 |
| 7 | ENSMUSG00000053769 | Lysmd1 | LysM, putative peptidoglycan-binding, domain containing 1 | 7.4388 | 0.0000 |
| 8 | ENSMUSG00000092607 | Scnm1 | sodium channel modifier 1 | 7.4388 | 0.0000 |
| 9 | ENSMUSG00000098498 | Mir8099-1 | microRNA 8099-1 | 7.4388 | 0.0000 |
| 10 | ENSMUSG00000105291 | Gm18901 | predicted gene, 18901 | 7.2384 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000018654 | Ikzf1 | IKAROS family zinc finger 1 | -6.1391 | 0.0000 |
| 50853 | ENSMUSG00000067873 | Htatsf1 | HIV TAT specific factor 1 | -6.1360 | 0.0000 |
| 50852 | ENSMUSG00000106062 | Gm43820 | predicted gene 43820 | -6.1359 | 0.0000 |
| 50851 | ENSMUSG00000083332 | Gm7599 | predicted gene 7599 | -6.1352 | 0.0000 |
| 50850 | ENSMUSG00000024430 | Cabyr | calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) | -6.1352 | 0.0000 |
| 50849 | ENSMUSG00000110569 | Gm18860 | predicted gene, 18860 | -6.1341 | 0.0000 |
| 50848 | ENSMUSG00000031803 | B3gnt3 | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 | -6.1341 | 0.0000 |
| 50847 | ENSMUSG00000087791 | Gm25969 | predicted gene, 25969 | -6.1330 | 0.0000 |
| 50846 | ENSMUSG00000107640 | Gm38804 | predicted gene, 38804 | -6.1274 | 0.0000 |
| 50845 | ENSMUSG00000053297 | AI854703 | expressed sequence AI854703 | -6.1274 | 0.0000 |
