SHOGoiN Cell Methylome: GSM1200273

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1200273


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M29Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000030996 Art1 ADP-ribosyltransferase 1 5.9386 0.0000
2 ENSMUSG00000070424 Art5 ADP-ribosyltransferase 5 5.9386 0.0000
3 ENSMUSG00000003546 Klc4 kinesin light chain 4 5.7137 0.0000
4 ENSMUSG00000105291 Gm18901 predicted gene, 18901 5.6147 0.0000
5 ENSMUSG00000105309 Gm21461 predicted gene, 21461 5.5850 0.0000
6 ENSMUSG00000031927 1700012B09Rik RIKEN cDNA 1700012B09 gene 5.5698 0.0000
7 ENSMUSG00000067610 Klri1 killer cell lectin-like receptor family I member 1 5.5691 0.0000
8 ENSMUSG00000009585 Apobec3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3 5.5546 0.0000
9 ENSMUSG00000064550 Gm24623 predicted gene, 24623 5.4131 0.0000
10 ENSMUSG00000105871 Gm43147 predicted gene 43147 5.4131 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000002227 Mov10 Moloney leukemia virus 10 -4.4394 0.0000
50853 ENSMUSG00000107037 Gm29793 predicted gene, 29793 -4.4371 0.0000
50852 ENSMUSG00000057157 Gm6054 predicted gene 6054 -4.4371 0.0000
50851 ENSMUSG00000060961 Slc4a4 solute carrier family 4 (anion exchanger), member 4 -4.4370 0.0000
50850 ENSMUSG00000025909 Sntg1 syntrophin, gamma 1 -4.4325 0.0000
50849 ENSMUSG00000089450 Gm24225 predicted gene, 24225 -4.4307 0.0000
50848 ENSMUSG00000032370 Lactb lactamase, beta -4.4307 0.0000
50847 ENSMUSG00000046230 Vps13a vacuolar protein sorting 13A -4.4303 0.0000
50846 ENSMUSG00000038954 Supt3 suppressor of Ty 3 -4.4245 0.0000
50845 ENSMUSG00000089427 Gm26005 predicted gene, 26005 -4.4219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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