Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1200273

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1200273


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M29Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000030996 Art1 ADP-ribosyltransferase 1 5.9386 0.0000
2 ENSMUSG00000070424 Art5 ADP-ribosyltransferase 5 5.9386 0.0000
3 ENSMUSG00000003546 Klc4 kinesin light chain 4 5.7137 0.0000
4 ENSMUSG00000105291 Gm18901 predicted gene, 18901 5.6147 0.0000
5 ENSMUSG00000105309 Gm21461 predicted gene, 21461 5.5850 0.0000
6 ENSMUSG00000031927 1700012B09Rik RIKEN cDNA 1700012B09 gene 5.5698 0.0000
7 ENSMUSG00000067610 Klri1 killer cell lectin-like receptor family I member 1 5.5691 0.0000
8 ENSMUSG00000009585 Apobec3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3 5.5546 0.0000
9 ENSMUSG00000064550 Gm24623 predicted gene, 24623 5.4131 0.0000
10 ENSMUSG00000105871 Gm43147 predicted gene 43147 5.4131 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000021953 Tdh L-threonine dehydrogenase -2.0000 1.0000
47080 ENSMUSG00000021368 Tbc1d7 TBC1 domain family, member 7 -2.0000 0.2519
47079 ENSMUSG00000021302 Ggps1 geranylgeranyl diphosphate synthase 1 -2.0000 0.2519
47078 ENSMUSG00000020887 A230052G05Rik RIKEN cDNA A230052G05 gene -2.0000 1.0000
47077 ENSMUSG00000020736 Nt5c 5',3'-nucleotidase, cytosolic -2.0000 0.0026
47076 ENSMUSG00000020601 Trib2 tribbles pseudokinase 2 -2.0000 0.1069
47075 ENSMUSG00000020572 Nampt nicotinamide phosphoribosyltransferase -2.0000 0.1069
47074 ENSMUSG00000020566 Atp6v1c2 ATPase, H+ transporting, lysosomal V1 subunit C2 -2.0000 1.0000
47073 ENSMUSG00000020415 Pttg1 pituitary tumor-transforming gene 1 -2.0000 0.1662
47072 ENSMUSG00000020409 Slu7 SLU7 splicing factor homolog (S. cerevisiae) -2.0000 0.1662

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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