Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1200273
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1200273
Profile download
5090101000001000000000-236
Sequence Read Archive
SRP023116
SRP023116_M29
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Sperm
Mouse
Genitalia
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000030996
Art1
ADP-ribosyltransferase 1
5.9386
0.0000
2
ENSMUSG00000070424
Art5
ADP-ribosyltransferase 5
5.9386
0.0000
3
ENSMUSG00000003546
Klc4
kinesin light chain 4
5.7137
0.0000
4
ENSMUSG00000105291
Gm18901
predicted gene, 18901
5.6147
0.0000
5
ENSMUSG00000105309
Gm21461
predicted gene, 21461
5.5850
0.0000
6
ENSMUSG00000031927
1700012B09Rik
RIKEN cDNA 1700012B09 gene
5.5698
0.0000
7
ENSMUSG00000067610
Klri1
killer cell lectin-like receptor family I member 1
5.5691
0.0000
8
ENSMUSG00000009585
Apobec3
apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3
5.5546
0.0000
9
ENSMUSG00000064550
Gm24623
predicted gene, 24623
5.4131
0.0000
10
ENSMUSG00000105871
Gm43147
predicted gene 43147
5.4131
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000021953
Tdh
L-threonine dehydrogenase
-2.0000
1.0000
47080
ENSMUSG00000021368
Tbc1d7
TBC1 domain family, member 7
-2.0000
0.2519
47079
ENSMUSG00000021302
Ggps1
geranylgeranyl diphosphate synthase 1
-2.0000
0.2519
47078
ENSMUSG00000020887
A230052G05Rik
RIKEN cDNA A230052G05 gene
-2.0000
1.0000
47077
ENSMUSG00000020736
Nt5c
5',3'-nucleotidase, cytosolic
-2.0000
0.0026
47076
ENSMUSG00000020601
Trib2
tribbles pseudokinase 2
-2.0000
0.1069
47075
ENSMUSG00000020572
Nampt
nicotinamide phosphoribosyltransferase
-2.0000
0.1069
47074
ENSMUSG00000020566
Atp6v1c2
ATPase, H+ transporting, lysosomal V1 subunit C2
-2.0000
1.0000
47073
ENSMUSG00000020415
Pttg1
pituitary tumor-transforming gene 1
-2.0000
0.1662
47072
ENSMUSG00000020409
Slu7
SLU7 splicing factor homolog (S. cerevisiae)
-2.0000
0.1662
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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