Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1200273

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1200273 Profile download	5090101000001000000000-236	Sequence Read Archive	SRP023116	SRP023116_M29	Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing	Methylome	Sperm	Mouse	Genitalia	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000030996	Art1	ADP-ribosyltransferase 1	5.9386	0.0000
2	ENSMUSG00000070424	Art5	ADP-ribosyltransferase 5	5.9386	0.0000
3	ENSMUSG00000003546	Klc4	kinesin light chain 4	5.7137	0.0000
4	ENSMUSG00000105291	Gm18901	predicted gene, 18901	5.6147	0.0000
5	ENSMUSG00000105309	Gm21461	predicted gene, 21461	5.5850	0.0000
6	ENSMUSG00000031927	1700012B09Rik	RIKEN cDNA 1700012B09 gene	5.5698	0.0000
7	ENSMUSG00000067610	Klri1	killer cell lectin-like receptor family I member 1	5.5691	0.0000
8	ENSMUSG00000009585	Apobec3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	5.5546	0.0000
9	ENSMUSG00000064550	Gm24623	predicted gene, 24623	5.4131	0.0000
10	ENSMUSG00000105871	Gm43147	predicted gene 43147	5.4131	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000021953	Tdh	L-threonine dehydrogenase	-2.0000	1.0000
47080	ENSMUSG00000021368	Tbc1d7	TBC1 domain family, member 7	-2.0000	0.2519
47079	ENSMUSG00000021302	Ggps1	geranylgeranyl diphosphate synthase 1	-2.0000	0.2519
47078	ENSMUSG00000020887	A230052G05Rik	RIKEN cDNA A230052G05 gene	-2.0000	1.0000
47077	ENSMUSG00000020736	Nt5c	5',3'-nucleotidase, cytosolic	-2.0000	0.0026
47076	ENSMUSG00000020601	Trib2	tribbles pseudokinase 2	-2.0000	0.1069
47075	ENSMUSG00000020572	Nampt	nicotinamide phosphoribosyltransferase	-2.0000	0.1069
47074	ENSMUSG00000020566	Atp6v1c2	ATPase, H+ transporting, lysosomal V1 subunit C2	-2.0000	1.0000
47073	ENSMUSG00000020415	Pttg1	pituitary tumor-transforming gene 1	-2.0000	0.1662
47072	ENSMUSG00000020409	Slu7	SLU7 splicing factor homolog (S. cerevisiae)	-2.0000	0.1662

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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