Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370522

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370522


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M1Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.1699 0.0000
2 ENSMUSG00000078656 Vps25 vacuolar protein sorting 25 2.5850 0.0000
3 ENSMUSG00000082994 Gm11848 predicted gene 11848 2.5850 0.0001
4 ENSMUSG00000084246 Gm15162 predicted gene 15162 2.5850 0.0000
5 ENSMUSG00000109354 Olfr706 olfactory receptor 706 2.5850 0.0001
6 ENSMUSG00000043308 Vmn1r75 vomeronasal 1 receptor 75 2.3219 0.0000
7 ENSMUSG00000053678 Defb40 defensin beta 40 2.3219 0.0006
8 ENSMUSG00000082520 Gm13349 predicted gene 13349 2.3219 0.0000
9 ENSMUSG00000085533 Gm12146 predicted gene 12146 2.3219 0.0006
47072 ENSMUSG00000085968 Gm13027 predicted gene 13027 -1.2415 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000022792 Yars2 tyrosyl-tRNA synthetase 2 (mitochondrial) -1.2423 0.0001
47080 ENSMUSG00000002068 Ccne1 cyclin E1 -1.2422 0.0384
47079 ENSMUSG00000042046 Dstyk dual serine/threonine and tyrosine protein kinase -1.2422 0.0002
47078 ENSMUSG00000021786 Oxsm 3-oxoacyl-ACP synthase, mitochondrial -1.2422 0.0012
47077 ENSMUSG00000039081 Zfp503 zinc finger protein 503 -1.2421 0.0000
47076 ENSMUSG00000094649 Gm7102 predicted gene 7102 -1.2421 0.0018
47075 ENSMUSG00000052085 Dock8 dedicator of cytokinesis 8 -1.2418 0.1045
47074 ENSMUSG00000036990 Otud4 OTU domain containing 4 -1.2417 0.0033
47073 ENSMUSG00000109206 Gm45137 predicted gene 45137 -1.2416 0.0000
47072 ENSMUSG00000085968 Gm13027 predicted gene 13027 -1.2415 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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