Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370524

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1370524 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP041257	SRP041257_M3	Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity	Methylome	Secondary oocyte (Ovarian follicle)	Mouse	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000084326	Gm12820	predicted gene 12820	2.6598	0.0000
2	ENSMUSG00000091669	Gm17117	predicted gene 17117	2.5850	0.0000
3	ENSMUSG00000100476	Nanog-ps2	Nanog pseudogene 2	2.5850	0.0001
4	ENSMUSG00000108164	Gm43899	predicted gene, 43899	2.5850	0.0001
5	ENSMUSG00000111627	Gm48749	predicted gene, 48749	2.5850	0.0000
6	ENSMUSG00000112019	Gm48748	predicted gene, 48748	2.5850	0.0000
7	ENSMUSG00000104479	Gm10305	predicted gene 10305	2.5538	0.0000
8	ENSMUSG00000050299	Gm9843	predicted gene 9843	2.4642	0.0000
9	ENSMUSG00000080574	Mir466i	microRNA 466i	2.4534	0.0000
10	ENSMUSG00000069421	Olfr810	olfactory receptor 810	2.3978	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000073421	H2-Ab1	histocompatibility 2, class II antigen A, beta 1	-1.4581	0.0000
47080	ENSMUSG00000105396	Gm6057	predicted gene 6057	-1.4581	0.0000
47079	ENSMUSG00000055485	Soga1	suppressor of glucose, autophagy associated 1	-1.4581	0.0000
47078	ENSMUSG00000111415	Gm39325	predicted gene, 39325	-1.4580	0.0001
47077	ENSMUSG00000032473	Cldn18	claudin 18	-1.4580	0.0000
47076	ENSMUSG00000105357	Gm42647	predicted gene 42647	-1.4580	0.1303
47075	ENSMUSG00000028883	Sema3a	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	-1.4580	0.0003
47074	ENSMUSG00000100594	2810414N06Rik	RIKEN cDNA 2810414N06 gene	-1.4580	0.0012
47073	ENSMUSG00000085928	4933427I22Rik	RIKEN cDNA 4933427I22 gene	-1.4580	0.0000
47072	ENSMUSG00000020312	Shc2	SHC (Src homology 2 domain containing) transforming protein 2	-1.4578	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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