Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1370524
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370524
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP041257
SRP041257_M3
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Secondary oocyte (Ovarian follicle)
Mouse
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000084326
Gm12820
predicted gene 12820
2.6598
0.0000
2
ENSMUSG00000091669
Gm17117
predicted gene 17117
2.5850
0.0000
3
ENSMUSG00000100476
Nanog-ps2
Nanog pseudogene 2
2.5850
0.0001
4
ENSMUSG00000108164
Gm43899
predicted gene, 43899
2.5850
0.0001
5
ENSMUSG00000111627
Gm48749
predicted gene, 48749
2.5850
0.0000
6
ENSMUSG00000112019
Gm48748
predicted gene, 48748
2.5850
0.0000
7
ENSMUSG00000104479
Gm10305
predicted gene 10305
2.5538
0.0000
8
ENSMUSG00000050299
Gm9843
predicted gene 9843
2.4642
0.0000
9
ENSMUSG00000080574
Mir466i
microRNA 466i
2.4534
0.0000
10
ENSMUSG00000069421
Olfr810
olfactory receptor 810
2.3978
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000073421
H2-Ab1
histocompatibility 2, class II antigen A, beta 1
-1.4581
0.0000
47080
ENSMUSG00000105396
Gm6057
predicted gene 6057
-1.4581
0.0000
47079
ENSMUSG00000055485
Soga1
suppressor of glucose, autophagy associated 1
-1.4581
0.0000
47078
ENSMUSG00000111415
Gm39325
predicted gene, 39325
-1.4580
0.0001
47077
ENSMUSG00000032473
Cldn18
claudin 18
-1.4580
0.0000
47076
ENSMUSG00000105357
Gm42647
predicted gene 42647
-1.4580
0.1303
47075
ENSMUSG00000028883
Sema3a
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
-1.4580
0.0003
47074
ENSMUSG00000100594
2810414N06Rik
RIKEN cDNA 2810414N06 gene
-1.4580
0.0012
47073
ENSMUSG00000085928
4933427I22Rik
RIKEN cDNA 4933427I22 gene
-1.4580
0.0000
47072
ENSMUSG00000020312
Shc2
SHC (Src homology 2 domain containing) transforming protein 2
-1.4578
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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