SHOGoiN Cell Methylome: GSM1370524
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370524 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP041257 | SRP041257_M3 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Secondary oocyte (Ovarian follicle) | Mouse | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000084326 | Gm12820 | predicted gene 12820 | 2.6598 | 0.0000 |
| 2 | ENSMUSG00000091669 | Gm17117 | predicted gene 17117 | 2.5850 | 0.0000 |
| 3 | ENSMUSG00000100476 | Nanog-ps2 | Nanog pseudogene 2 | 2.5850 | 0.0001 |
| 4 | ENSMUSG00000108164 | Gm43899 | predicted gene, 43899 | 2.5850 | 0.0001 |
| 5 | ENSMUSG00000111627 | Gm48749 | predicted gene, 48749 | 2.5850 | 0.0000 |
| 6 | ENSMUSG00000112019 | Gm48748 | predicted gene, 48748 | 2.5850 | 0.0000 |
| 7 | ENSMUSG00000104479 | Gm10305 | predicted gene 10305 | 2.5538 | 0.0000 |
| 8 | ENSMUSG00000050299 | Gm9843 | predicted gene 9843 | 2.4642 | 0.0000 |
| 9 | ENSMUSG00000080574 | Mir466i | microRNA 466i | 2.4534 | 0.0000 |
| 10 | ENSMUSG00000069421 | Olfr810 | olfactory receptor 810 | 2.3978 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000092411 | Gm5594 | predicted gene 5594 | -2.0000 | 1.0000 |
| 50853 | ENSMUSG00000082185 | Gm12428 | predicted gene 12428 | -2.0000 | 1.0000 |
| 50852 | ENSMUSG00000080894 | Defa-ps15 | defensin, alpha, pseudogene 15 | -2.0000 | 1.0000 |
| 50851 | ENSMUSG00000080410 | Gm26472 | predicted gene, 26472 | -2.0000 | 0.6012 |
| 50850 | ENSMUSG00000079432 | Gm15023 | predicted gene 15023 | -2.0000 | 1.0000 |
| 50849 | ENSMUSG00000074441 | Gm15292 | predicted gene 15292 | -2.0000 | 0.6012 |
| 50848 | ENSMUSG00000073965 | Olfr568 | olfactory receptor 568 | -2.0000 | 0.6012 |
| 50847 | ENSMUSG00000073835 | Mup-ps12 | major urinary protein, pseudogene 12 | -2.0000 | 1.0000 |
| 50846 | ENSMUSG00000072931 | Gm15080 | predicted gene 15080 | -2.0000 | 0.2348 |
| 50845 | ENSMUSG00000071613 | Gm10340 | predicted gene 10340 | -2.0000 | 1.0000 |
