SHOGoiN Cell Methylome: GSM1370524
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370524 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP041257 | SRP041257_M3 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Secondary oocyte (Ovarian follicle) | Mouse | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000084326 | Gm12820 | predicted gene 12820 | 2.6598 | 0.0000 |
| 2 | ENSMUSG00000091669 | Gm17117 | predicted gene 17117 | 2.5850 | 0.0000 |
| 3 | ENSMUSG00000100476 | Nanog-ps2 | Nanog pseudogene 2 | 2.5850 | 0.0001 |
| 4 | ENSMUSG00000108164 | Gm43899 | predicted gene, 43899 | 2.5850 | 0.0001 |
| 5 | ENSMUSG00000111627 | Gm48749 | predicted gene, 48749 | 2.5850 | 0.0000 |
| 6 | ENSMUSG00000112019 | Gm48748 | predicted gene, 48748 | 2.5850 | 0.0000 |
| 7 | ENSMUSG00000104479 | Gm10305 | NA | 2.5538 | 0.0000 |
| 8 | ENSMUSG00000050299 | Gm9843 | NA | 2.4642 | 0.0000 |
| 9 | ENSMUSG00000080574 | Mir466i | microRNA 466i | 2.4534 | 0.0000 |
| 10 | ENSMUSG00000069421 | Olfr810 | NA | 2.3978 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000045284 | Dcaf12l1 | DDB1- and CUL4-associated factor 12-like protein 1 | -2.3146 | 0.0000 |
| 50997 | ENSMUSG00000070695 | Cntnap5a | Contactin-associated protein like 5-1 | -2.3023 | 0.0642 |
| 50996 | ENSMUSG00000063615 | Olfr64 | NA | -2.3023 | 0.0420 |
| 50995 | ENSMUSG00000102030 | Gm29106 | NA | -2.2970 | 0.0074 |
| 50994 | ENSMUSG00000096732 | Gm8897 | NA | -2.2925 | 0.6144 |
| 50993 | ENSMUSG00000034265 | Zdhhc14 | zinc finger, DHHC domain containing 14 | -2.2861 | 0.0000 |
| 50992 | ENSMUSG00000025911 | Adhfe1 | Mus musculus alcohol dehydrogenase, iron containing, 1 (Adhfe1), transcript variant 2, mRNA. | -2.2777 | 0.0000 |
| 50991 | ENSMUSG00000111204 | Gm47320 | predicted gene, 47320 | -2.2776 | 0.0000 |
| 50990 | ENSMUSG00000026643 | Nmt2 | Glycylpeptide N-tetradecanoyltransferase 2 | -2.2654 | 0.0000 |
| 50989 | ENSMUSG00000085071 | Gm14066 | predicted gene 14066 | -2.2340 | 0.0000 |
