Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370524

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370524


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M3Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000084326 Gm12820 predicted gene 12820 2.6598 0.0000
2 ENSMUSG00000091669 Gm17117 predicted gene 17117 2.5850 0.0000
3 ENSMUSG00000100476 Nanog-ps2 Nanog pseudogene 2 2.5850 0.0001
4 ENSMUSG00000108164 Gm43899 predicted gene, 43899 2.5850 0.0001
5 ENSMUSG00000111627 Gm48749 predicted gene, 48749 2.5850 0.0000
6 ENSMUSG00000112019 Gm48748 predicted gene, 48748 2.5850 0.0000
7 ENSMUSG00000104479 Gm10305 predicted gene 10305 2.5538 0.0000
8 ENSMUSG00000050299 Gm9843 predicted gene 9843 2.4642 0.0000
9 ENSMUSG00000080574 Mir466i microRNA 466i 2.4534 0.0000
10 ENSMUSG00000069421 Olfr810 olfactory receptor 810 2.3978 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000073421 H2-Ab1 histocompatibility 2, class II antigen A, beta 1 -1.4581 0.0000
47080 ENSMUSG00000105396 Gm6057 predicted gene 6057 -1.4581 0.0000
47079 ENSMUSG00000055485 Soga1 suppressor of glucose, autophagy associated 1 -1.4581 0.0000
47078 ENSMUSG00000111415 Gm39325 predicted gene, 39325 -1.4580 0.0001
47077 ENSMUSG00000032473 Cldn18 claudin 18 -1.4580 0.0000
47076 ENSMUSG00000105357 Gm42647 predicted gene 42647 -1.4580 0.1303
47075 ENSMUSG00000028883 Sema3a sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -1.4580 0.0003
47074 ENSMUSG00000100594 2810414N06Rik RIKEN cDNA 2810414N06 gene -1.4580 0.0012
47073 ENSMUSG00000085928 4933427I22Rik RIKEN cDNA 4933427I22 gene -1.4580 0.0000
47072 ENSMUSG00000020312 Shc2 SHC (Src homology 2 domain containing) transforming protein 2 -1.4578 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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