Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370525

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370525


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M4Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000104093 A330015K06Rik RIKEN cDNA A330015K06 gene 2.5850 0.0001
3 ENSMUSG00000083490 Gm14940 predicted gene 14940 2.3219 0.0005
4 ENSMUSG00000098085 Gm8919 predicted gene 8919 2.3219 0.0005
5 ENSMUSG00000100632 9430060I03Rik RIKEN cDNA 9430060I03 gene 2.3219 0.0000
6 ENSMUSG00000103706 6820402A03Rik RIKEN cDNA 6820402A03 gene 2.3219 0.0000
7 ENSMUSG00000031197 Vbp1 von Hippel-Lindau binding protein 1 2.1610 0.0000
8 ENSMUSG00000106058 Gm43013 predicted gene 43013 2.0047 0.0000
9 ENSMUSG00000025939 Ube2w ubiquitin-conjugating enzyme E2W (putative) 2.0000 0.0000
10 ENSMUSG00000034732 Pabpc5 poly(A) binding protein, cytoplasmic 5 2.0000 0.0034
47072 ENSMUSG00000019975 Ikbip IKBKB interacting protein -1.1590 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000029755 Dlx5 distal-less homeobox 5 -1.1595 0.2497
47080 ENSMUSG00000024780 Cdc37l1 cell division cycle 37-like 1 -1.1595 0.0161
47079 ENSMUSG00000022000 Zc3h13 zinc finger CCCH type containing 13 -1.1595 0.0018
47078 ENSMUSG00000026834 Acvr1c activin A receptor, type IC -1.1595 0.0538
47077 ENSMUSG00000024064 Galnt14 polypeptide N-acetylgalactosaminyltransferase 14 -1.1593 0.0000
47076 ENSMUSG00000044499 Hs3st5 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 -1.1593 0.0204
47075 ENSMUSG00000066108 Muc5b mucin 5, subtype B, tracheobronchial -1.1592 0.0519
47074 ENSMUSG00000086693 A730081D07Rik RIKEN cDNA A730081D07 gene -1.1590 0.0174
47073 ENSMUSG00000038683 Pak1ip1 PAK1 interacting protein 1 -1.1590 0.0174
47072 ENSMUSG00000019975 Ikbip IKBKB interacting protein -1.1590 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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