Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370527

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370527


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M6Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000086244 4930558G05Rik RIKEN cDNA 4930558G05 gene 2.5850 0.0001
3 ENSMUSG00000096386 Vmn1r100 vomeronasal 1 receptor 100 2.5850 0.0001
5 ENSMUSG00000052217 Hbb-bh1 hemoglobin Z, beta-like embryonic chain 2.3219 0.0005
6 ENSMUSG00000078621 Hbb-bh2 hemoglobin beta, bh2 2.3219 0.0005
7 ENSMUSG00000081033 Gm14797 predicted gene 14797 2.3219 0.0005
8 ENSMUSG00000085481 Gm16304 predicted gene 16304 2.3219 0.0000
9 ENSMUSG00000099960 Gm28590 predicted gene 28590 2.3219 0.0005
10 ENSMUSG00000102925 Gm37150 predicted gene, 37150 2.3219 0.0000
47072 ENSMUSG00000073600 Prob1 proline rich basic protein 1 -1.3287 0.0000
47073 ENSMUSG00000065016 Snora3 small nucleolar RNA, H/ACA box 3 -1.3288 0.0029

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000028696 Ipp IAP promoted placental gene -1.3290 0.0005
47080 ENSMUSG00000102222 Pcdhga10 protocadherin gamma subfamily A, 10 -1.3289 0.0006
47079 ENSMUSG00000090100 Ttbk2 tau tubulin kinase 2 -1.3289 0.7913
47078 ENSMUSG00000087519 AV039307 expressed sequence AV039307 -1.3289 0.7913
47077 ENSMUSG00000060938 Rpl26 ribosomal protein L26 -1.3288 0.0044
47076 ENSMUSG00000030214 Plbd1 phospholipase B domain containing 1 -1.3288 0.0000
47075 ENSMUSG00000094220 Trav6-3 T cell receptor alpha variable 6-3 -1.3288 0.2380
47074 ENSMUSG00000058513 Olfr801 olfactory receptor 801 -1.3288 0.2380
47073 ENSMUSG00000065016 Snora3 small nucleolar RNA, H/ACA box 3 -1.3288 0.0029
47072 ENSMUSG00000073600 Prob1 proline rich basic protein 1 -1.3287 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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