Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370528

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370528


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M7Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000004542 Psg19 pregnancy specific glycoprotein 19 2.0000 0.0032
2 ENSMUSG00000049882 Vcpkmt valosin containing protein lysine (K) methyltransferase 2.0000 0.0032
3 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.0000 0.0032
5 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.0000 0.0032
6 ENSMUSG00000096499 Ighv1-5 immunoglobulin heavy variable V1-5 2.0000 0.0000
9 ENSMUSG00000099611 Vmn1r189 vomeronasal 1 receptor 189 2.0000 0.0032
47072 ENSMUSG00000111364 Gm36745 predicted gene, 36745 -1.0000 1.0000
47073 ENSMUSG00000111369 Gm47043 predicted gene, 47043 -1.0000 1.0000
47074 ENSMUSG00000111371 Gm47162 predicted gene, 47162 -1.0000 1.0000
47075 ENSMUSG00000111374 Gm50490 predicted gene, 50490 -1.0000 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000111414 Gm18103 predicted gene, 18103 -1.0000 1.0000
47080 ENSMUSG00000111413 Gm47716 predicted gene, 47716 -1.0000 0.6036
47079 ENSMUSG00000111404 Gm47169 predicted gene, 47169 -1.0000 1.0000
47078 ENSMUSG00000111399 Gm47328 predicted gene, 47328 -1.0000 1.0000
47077 ENSMUSG00000111397 Gm48232 predicted gene, 48232 -1.0000 1.0000
47076 ENSMUSG00000111396 Gm7333 predicted gene 7333 -1.0000 1.0000
47075 ENSMUSG00000111374 Gm50490 predicted gene, 50490 -1.0000 1.0000
47074 ENSMUSG00000111371 Gm47162 predicted gene, 47162 -1.0000 1.0000
47073 ENSMUSG00000111369 Gm47043 predicted gene, 47043 -1.0000 1.0000
47072 ENSMUSG00000111364 Gm36745 predicted gene, 36745 -1.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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