SHOGoiN Cell Methylome: GSM1370528
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370528 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP041257 | SRP041257_M7 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Secondary oocyte (Ovarian follicle) | Mouse | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000004542 | Psg19 | pregnancy specific glycoprotein 19 | 2.0000 | 0.0032 |
| 2 | ENSMUSG00000049882 | Vcpkmt | valosin containing protein lysine (K) methyltransferase | 2.0000 | 0.0032 |
| 3 | ENSMUSG00000082540 | Vmn1r-ps112 | vomeronasal 1 receptor, pseudogene 112 | 2.0000 | 0.0032 |
| 4 | ENSMUSG00000088184 | Gm23137 | predicted gene, 23137 | 2.0000 | 0.0032 |
| 5 | ENSMUSG00000093385 | A330044P14Rik | RIKEN cDNA A330044P14 gene | 2.0000 | 0.0032 |
| 6 | ENSMUSG00000096499 | Ighv1-5 | NA | 2.0000 | 0.0000 |
| 7 | ENSMUSG00000098357 | Mir7094-2 | microRNA 7094-2 | 2.0000 | 0.0000 |
| 8 | ENSMUSG00000098943 | Rnu3b1 | U3B small nuclear RNA 1 | 2.0000 | 0.0032 |
| 9 | ENSMUSG00000099611 | Vmn1r189 | vomeronasal 1 receptor 189 | 2.0000 | 0.0032 |
| 10 | ENSMUSG00000105025 | Rnu3b1 | U3B small nuclear RNA 1 | 2.0000 | 0.0032 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000101804 | Gm28813 | predicted gene 28813 | -2.0000 | 1.0000 |
| 50997 | ENSMUSG00000101512 | Gm28135 | predicted gene 28135 | -2.0000 | 1.0000 |
| 50996 | ENSMUSG00000101440 | Gm29425 | predicted gene 29425 | -2.0000 | 1.0000 |
| 50995 | ENSMUSG00000100938 | Gm28726 | predicted gene 28726 | -2.0000 | 1.0000 |
| 50994 | ENSMUSG00000100440 | Gm28405 | predicted gene 28405 | -2.0000 | 1.0000 |
| 50993 | ENSMUSG00000100227 | Gm28291 | predicted gene 28291 | -2.0000 | 1.0000 |
| 50992 | ENSMUSG00000100126 | Gm29584 | predicted gene 29584 | -2.0000 | 1.0000 |
| 50991 | ENSMUSG00000099785 | Gm28425 | predicted gene 28425 | -2.0000 | 1.0000 |
| 50990 | ENSMUSG00000099554 | Gm28259 | predicted gene 28259 | -2.0000 | 1.0000 |
| 50989 | ENSMUSG00000099494 | Gm28197 | predicted gene 28197 | -2.0000 | 1.0000 |
