Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1370528
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370528
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP041257
SRP041257_M7
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Secondary oocyte (Ovarian follicle)
Mouse
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000004542
Psg19
pregnancy specific glycoprotein 19
2.0000
0.0032
2
ENSMUSG00000049882
Vcpkmt
valosin containing protein lysine (K) methyltransferase
2.0000
0.0032
3
ENSMUSG00000082540
Vmn1r-ps112
vomeronasal 1 receptor, pseudogene 112
2.0000
0.0032
5
ENSMUSG00000093385
A330044P14Rik
RIKEN cDNA A330044P14 gene
2.0000
0.0032
6
ENSMUSG00000096499
Ighv1-5
immunoglobulin heavy variable V1-5
2.0000
0.0000
9
ENSMUSG00000099611
Vmn1r189
vomeronasal 1 receptor 189
2.0000
0.0032
47072
ENSMUSG00000111364
Gm36745
predicted gene, 36745
-1.0000
1.0000
47073
ENSMUSG00000111369
Gm47043
predicted gene, 47043
-1.0000
1.0000
47074
ENSMUSG00000111371
Gm47162
predicted gene, 47162
-1.0000
1.0000
47075
ENSMUSG00000111374
Gm50490
predicted gene, 50490
-1.0000
1.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000111414
Gm18103
predicted gene, 18103
-1.0000
1.0000
47080
ENSMUSG00000111413
Gm47716
predicted gene, 47716
-1.0000
0.6036
47079
ENSMUSG00000111404
Gm47169
predicted gene, 47169
-1.0000
1.0000
47078
ENSMUSG00000111399
Gm47328
predicted gene, 47328
-1.0000
1.0000
47077
ENSMUSG00000111397
Gm48232
predicted gene, 48232
-1.0000
1.0000
47076
ENSMUSG00000111396
Gm7333
predicted gene 7333
-1.0000
1.0000
47075
ENSMUSG00000111374
Gm50490
predicted gene, 50490
-1.0000
1.0000
47074
ENSMUSG00000111371
Gm47162
predicted gene, 47162
-1.0000
1.0000
47073
ENSMUSG00000111369
Gm47043
predicted gene, 47043
-1.0000
1.0000
47072
ENSMUSG00000111364
Gm36745
predicted gene, 36745
-1.0000
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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