Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370529

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370529


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M8Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.7004 0.0000
2 ENSMUSG00000101031 Ms4a12 membrane-spanning 4-domains, subfamily A, member 12 2.5850 0.0001
4 ENSMUSG00000109354 Olfr706 olfactory receptor 706 2.3502 0.0000
5 ENSMUSG00000085856 Gm12050 predicted gene 12050 2.3219 0.0005
6 ENSMUSG00000081283 Vmn1r-ps104 vomeronasal 1 receptor, pseudogene 104 2.3023 0.0000
7 ENSMUSG00000064208 Gm10145 predicted gene 10145 2.1073 0.0000
8 ENSMUSG00000089987 Gpx2-ps1 glutathione peroxidase 2, pseudogene 1 2.0878 0.0000
9 ENSMUSG00000101014 Gm28289 predicted gene 28289 2.0060 0.0000
10 ENSMUSG00000060701 Fpr-rs3 formyl peptide receptor, related sequence 3 2.0000 0.0032
47072 ENSMUSG00000108010 Gm38708 predicted gene, 38708 -1.1670 0.0010

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000026971 Itgb6 integrin beta 6 -1.1671 0.0955
47080 ENSMUSG00000022155 Mroh2b maestro heat-like repeat family member 2B -1.1671 0.0955
47079 ENSMUSG00000021385 Ippk inositol 1,3,4,5,6-pentakisphosphate 2-kinase -1.1671 0.3733
47078 ENSMUSG00000020787 P2rx1 purinergic receptor P2X, ligand-gated ion channel, 1 -1.1671 0.0955
47077 ENSMUSG00000016255 Tubb1 tubulin, beta 1 class VI -1.1671 0.3733
47076 ENSMUSG00000015579 Nkx2-5 NK2 homeobox 5 -1.1671 0.3733
47075 ENSMUSG00000008333 Snrpb2 U2 small nuclear ribonucleoprotein B -1.1671 0.3733
47074 ENSMUSG00000029108 Pcdh7 protocadherin 7 -1.1670 0.0000
47073 ENSMUSG00000027863 Cd2 CD2 antigen -1.1670 0.0005
47072 ENSMUSG00000108010 Gm38708 predicted gene, 38708 -1.1670 0.0010

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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