Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370530

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1370530 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP041257	SRP041257_M9	Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity	Methylome	Secondary oocyte (Ovarian follicle)	Mouse	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000109354	Olfr706	olfactory receptor 706	4.3923	0.0000
2	ENSMUSG00000105566	Obox4-ps4	oocyte specific homeobox 4, pseudogene 4	3.0000	0.0000
3	ENSMUSG00000082540	Vmn1r-ps112	vomeronasal 1 receptor, pseudogene 112	2.8074	0.0000
4	ENSMUSG00000089307	Gm24843	predicted gene, 24843	2.5850	0.0001
5	ENSMUSG00000098115	Gm8816	predicted gene 8816	2.5850	0.0001
6	ENSMUSG00000082994	Gm11848	predicted gene 11848	2.3900	0.0000
7	ENSMUSG00000055430	Nap1l5	nucleosome assembly protein 1-like 5	2.3219	0.0000
8	ENSMUSG00000080903	Gm16383	predicted gene 16383	2.3219	0.0007
9	ENSMUSG00000082005	Gm7189	predicted pseudogene 7189	2.3219	0.0007
10	ENSMUSG00000098110	Gm26956	predicted gene, 26956	2.3219	0.0007

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000066647	Gm5113	predicted gene 5113	-1.2289	0.0065
47080	ENSMUSG00000110280	Gm45497	predicted gene 45497	-1.2289	0.0007
47079	ENSMUSG00000048965	Mrgpre	MAS-related GPR, member E	-1.2289	0.0403
47078	ENSMUSG00000088793	Gm22540	predicted gene, 22540	-1.2289	0.0373
47077	ENSMUSG00000002100	Mybpc3	myosin binding protein C, cardiac	-1.2288	0.0011
47076	ENSMUSG00000018143	Mafk	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	-1.2288	0.0001
47075	ENSMUSG00000029581	Fscn1	fascin actin-bundling protein 1	-1.2284	0.0000
47074	ENSMUSG00000112333	1700048P04Rik	RIKEN cDNA 1700048P04 gene	-1.2284	0.0157
47073	ENSMUSG00000027463	Slc52a3	solute carrier protein family 52, member 3	-1.2284	0.0009
47072	ENSMUSG00000034799	Unc13a	unc-13 homolog A	-1.2281	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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