Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1370530
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370530
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP041257
SRP041257_M9
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Secondary oocyte (Ovarian follicle)
Mouse
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000109354
Olfr706
olfactory receptor 706
4.3923
0.0000
2
ENSMUSG00000105566
Obox4-ps4
oocyte specific homeobox 4, pseudogene 4
3.0000
0.0000
3
ENSMUSG00000082540
Vmn1r-ps112
vomeronasal 1 receptor, pseudogene 112
2.8074
0.0000
4
ENSMUSG00000089307
Gm24843
predicted gene, 24843
2.5850
0.0001
5
ENSMUSG00000098115
Gm8816
predicted gene 8816
2.5850
0.0001
6
ENSMUSG00000082994
Gm11848
predicted gene 11848
2.3900
0.0000
7
ENSMUSG00000055430
Nap1l5
nucleosome assembly protein 1-like 5
2.3219
0.0000
8
ENSMUSG00000080903
Gm16383
predicted gene 16383
2.3219
0.0007
9
ENSMUSG00000082005
Gm7189
predicted pseudogene 7189
2.3219
0.0007
10
ENSMUSG00000098110
Gm26956
predicted gene, 26956
2.3219
0.0007
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000066647
Gm5113
predicted gene 5113
-1.2289
0.0065
47080
ENSMUSG00000110280
Gm45497
predicted gene 45497
-1.2289
0.0007
47079
ENSMUSG00000048965
Mrgpre
MAS-related GPR, member E
-1.2289
0.0403
47078
ENSMUSG00000088793
Gm22540
predicted gene, 22540
-1.2289
0.0373
47077
ENSMUSG00000002100
Mybpc3
myosin binding protein C, cardiac
-1.2288
0.0011
47076
ENSMUSG00000018143
Mafk
v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)
-1.2288
0.0001
47075
ENSMUSG00000029581
Fscn1
fascin actin-bundling protein 1
-1.2284
0.0000
47074
ENSMUSG00000112333
1700048P04Rik
RIKEN cDNA 1700048P04 gene
-1.2284
0.0157
47073
ENSMUSG00000027463
Slc52a3
solute carrier protein family 52, member 3
-1.2284
0.0009
47072
ENSMUSG00000034799
Unc13a
unc-13 homolog A
-1.2281
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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