SHOGoiN Cell Methylome: GSM1370530
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370530 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP041257 | SRP041257_M9 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Secondary oocyte (Ovarian follicle) | Mouse | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000109354 | Olfr706 | olfactory receptor 706 | 4.3923 | 0.0000 |
| 2 | ENSMUSG00000105566 | Obox4-ps4 | oocyte specific homeobox 4, pseudogene 4 | 3.0000 | 0.0000 |
| 3 | ENSMUSG00000082540 | Vmn1r-ps112 | vomeronasal 1 receptor, pseudogene 112 | 2.8074 | 0.0000 |
| 4 | ENSMUSG00000089307 | Gm24843 | predicted gene, 24843 | 2.5850 | 0.0001 |
| 5 | ENSMUSG00000098115 | Gm8816 | predicted gene 8816 | 2.5850 | 0.0001 |
| 6 | ENSMUSG00000082994 | Gm11848 | predicted gene 11848 | 2.3900 | 0.0000 |
| 7 | ENSMUSG00000055430 | Nap1l5 | nucleosome assembly protein 1-like 5 | 2.3219 | 0.0000 |
| 8 | ENSMUSG00000080903 | Gm16383 | predicted gene 16383 | 2.3219 | 0.0007 |
| 9 | ENSMUSG00000082005 | Gm7189 | predicted pseudogene 7189 | 2.3219 | 0.0007 |
| 10 | ENSMUSG00000098110 | Gm26956 | predicted gene, 26956 | 2.3219 | 0.0007 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000064494 | Gm22063 | predicted gene, 22063 | -1.6667 | 0.6068 |
| 50853 | ENSMUSG00000058904 | Olfr1413 | olfactory receptor 1413 | -1.6667 | 0.6068 |
| 50852 | ENSMUSG00000031885 | Cbfb | core binding factor beta | -1.6667 | 0.6068 |
| 50851 | ENSMUSG00000018589 | Glra2 | glycine receptor, alpha 2 subunit | -1.6667 | 0.6068 |
| 50850 | ENSMUSG00000039914 | Coq10a | coenzyme Q10A | -1.6662 | 0.0000 |
| 50849 | ENSMUSG00000101597 | Gm5621 | predicted gene 5621 | -1.6660 | 0.0927 |
| 50848 | ENSMUSG00000083212 | Gm12274 | predicted gene 12274 | -1.6647 | 0.0041 |
| 50847 | ENSMUSG00000043445 | Pgp | phosphoglycolate phosphatase | -1.6635 | 0.0000 |
| 50846 | ENSMUSG00000109371 | Gm44626 | predicted gene 44626 | -1.6610 | 1.0000 |
| 50845 | ENSMUSG00000100266 | Gm5372 | predicted gene 5372 | -1.6610 | 0.3818 |
