Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370530

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370530


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M9Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 4.3923 0.0000
2 ENSMUSG00000105566 Obox4-ps4 oocyte specific homeobox 4, pseudogene 4 3.0000 0.0000
3 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.8074 0.0000
4 ENSMUSG00000089307 Gm24843 predicted gene, 24843 2.5850 0.0001
5 ENSMUSG00000098115 Gm8816 predicted gene 8816 2.5850 0.0001
6 ENSMUSG00000082994 Gm11848 predicted gene 11848 2.3900 0.0000
7 ENSMUSG00000055430 Nap1l5 nucleosome assembly protein 1-like 5 2.3219 0.0000
8 ENSMUSG00000080903 Gm16383 predicted gene 16383 2.3219 0.0007
9 ENSMUSG00000082005 Gm7189 predicted pseudogene 7189 2.3219 0.0007
10 ENSMUSG00000098110 Gm26956 predicted gene, 26956 2.3219 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000066647 Gm5113 predicted gene 5113 -1.2289 0.0065
47080 ENSMUSG00000110280 Gm45497 predicted gene 45497 -1.2289 0.0007
47079 ENSMUSG00000048965 Mrgpre MAS-related GPR, member E -1.2289 0.0403
47078 ENSMUSG00000088793 Gm22540 predicted gene, 22540 -1.2289 0.0373
47077 ENSMUSG00000002100 Mybpc3 myosin binding protein C, cardiac -1.2288 0.0011
47076 ENSMUSG00000018143 Mafk v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian) -1.2288 0.0001
47075 ENSMUSG00000029581 Fscn1 fascin actin-bundling protein 1 -1.2284 0.0000
47074 ENSMUSG00000112333 1700048P04Rik RIKEN cDNA 1700048P04 gene -1.2284 0.0157
47073 ENSMUSG00000027463 Slc52a3 solute carrier protein family 52, member 3 -1.2284 0.0009
47072 ENSMUSG00000034799 Unc13a unc-13 homolog A -1.2281 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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