Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370531

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370531


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M10Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109100 Olfr1464-ps1 olfactory receptor 1464, pseudogene 1 2.5850 0.0000
2 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 2.4534 0.0000
3 ENSMUSG00000025666 Tmem47 transmembrane protein 47 2.3219 0.0005
4 ENSMUSG00000084899 Gm15344 predicted gene 15344 2.3219 0.0005
5 ENSMUSG00000087224 Gm2182 predicted gene 2182 2.3219 0.0005
6 ENSMUSG00000091283 Gm17234 predicted gene 17234 2.3219 0.0000
8 ENSMUSG00000102525 Gm37784 predicted gene, 37784 2.3219 0.0005
9 ENSMUSG00000107613 Gm43927 predicted gene, 43927 2.3219 0.0005
10 ENSMUSG00000082687 Gm11474 predicted gene 11474 2.2154 0.0000
47072 ENSMUSG00000039270 Megf9 multiple EGF-like-domains 9 -1.1645 0.0030

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000074579 Lekr1 leucine, glutamate and lysine rich 1 -1.1650 0.0887
47080 ENSMUSG00000073794 I0C0044D17Rik RIKEN cDNA I0C0044D17 gene -1.1649 0.0000
47079 ENSMUSG00000026610 Esrrg estrogen-related receptor gamma -1.1649 0.0000
47078 ENSMUSG00000039457 Ppl periplakin -1.1648 0.0114
47077 ENSMUSG00000032501 Trib1 tribbles pseudokinase 1 -1.1648 0.0020
47076 ENSMUSG00000032878 Ccdc85a coiled-coil domain containing 85A -1.1647 0.0029
47073 ENSMUSG00000111531 Gm32688 predicted gene, 32688 -1.1645 0.0030
47072 ENSMUSG00000039270 Megf9 multiple EGF-like-domains 9 -1.1645 0.0030
10 ENSMUSG00000082687 Gm11474 predicted gene 11474 2.2154 0.0000
9 ENSMUSG00000107613 Gm43927 predicted gene, 43927 2.3219 0.0005

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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