Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370532

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370532


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M11Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 5.4919 0.0000
2 ENSMUSG00000053678 Defb40 defensin beta 40 3.3219 0.0000
3 ENSMUSG00000022962 Gart phosphoribosylglycinamide formyltransferase 2.8074 0.0000
4 ENSMUSG00000002308 Cd320 CD320 antigen 2.5850 0.0001
5 ENSMUSG00000086020 Gm12239 predicted gene 12239 2.5850 0.0001
6 ENSMUSG00000104335 Gm38281 predicted gene, 38281 2.5850 0.0001
7 ENSMUSG00000084301 Gm7856 predicted gene 7856 2.3219 0.0000
8 ENSMUSG00000089589 Gm23343 predicted gene, 23343 2.3219 0.0006
9 ENSMUSG00000099741 Gm5253 predicted gene 5253 2.3219 0.0006
10 ENSMUSG00000107613 Gm43927 predicted gene, 43927 2.3219 0.0006

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000095970 Gm19402 predicted gene, 19402 -1.1981 0.2324
47080 ENSMUSG00000086939 Gm13530 predicted gene 13530 -1.1981 0.2324
47079 ENSMUSG00000082418 Gm13126 predicted gene 13126 -1.1981 0.2324
47078 ENSMUSG00000081180 Gm7212 predicted gene 7212 -1.1981 0.0382
47077 ENSMUSG00000072673 Gm10392 predicted gene 10392 -1.1981 0.0230
47076 ENSMUSG00000054892 Txk TXK tyrosine kinase -1.1981 0.2324
47075 ENSMUSG00000038793 Lefty1 left right determination factor 1 -1.1981 0.2343
47074 ENSMUSG00000000724 Cryba1 crystallin, beta A1 -1.1981 0.2324
47073 ENSMUSG00000112396 Gm47574 predicted gene, 47574 -1.1976 0.0261
47072 ENSMUSG00000065188 Gm25140 predicted gene, 25140 -1.1976 0.0261

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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