Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1370533
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370533
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP041257
SRP041257_M12
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Secondary oocyte (Ovarian follicle)
Mouse
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000109354
Olfr706
olfactory receptor 706
4.8074
0.0000
2
ENSMUSG00000105566
Obox4-ps4
oocyte specific homeobox 4, pseudogene 4
3.0000
0.0000
4
ENSMUSG00000103509
Gm38372
predicted gene, 38372
2.6340
0.0000
5
ENSMUSG00000107745
Gm43917
predicted gene, 43917
2.5850
0.0000
6
ENSMUSG00000089589
Gm23343
predicted gene, 23343
2.4594
0.0000
7
ENSMUSG00000088654
Gm24850
predicted gene, 24850
2.3900
0.0000
8
ENSMUSG00000081531
Vmn1r-ps113
vomeronasal 1 receptor, pseudogene 113
2.3219
0.0006
9
ENSMUSG00000093385
A330044P14Rik
RIKEN cDNA A330044P14 gene
2.3219
0.0006
10
ENSMUSG00000110047
A230085B16Rik
RIKEN cDNA A230085B16 gene
2.3219
0.0000
47072
ENSMUSG00000097691
9030616G12Rik
RIKEN cDNA 9030616G12 gene
-1.2500
0.5997
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000111465
Gm47113
predicted gene, 47113
-1.2500
0.5997
47080
ENSMUSG00000110957
Gm7439
predicted gene 7439
-1.2500
0.5997
47079
ENSMUSG00000109014
Gm44546
predicted gene 44546
-1.2500
0.0960
47078
ENSMUSG00000108433
Gm19761
predicted gene, 19761
-1.2500
0.2341
47077
ENSMUSG00000106259
Trav11n
T cell receptor alpha variable 11N
-1.2500
0.2341
47076
ENSMUSG00000104189
Gm37822
predicted gene, 37822
-1.2500
0.5997
47075
ENSMUSG00000103960
Gm37119
predicted gene, 37119
-1.2500
0.2341
47074
ENSMUSG00000103340
Ighv1-1
immunoglobulin heavy variable V1-1
-1.2500
0.5997
47073
ENSMUSG00000101506
Gm28385
predicted gene 28385
-1.2500
0.5997
47072
ENSMUSG00000097691
9030616G12Rik
RIKEN cDNA 9030616G12 gene
-1.2500
0.5997
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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