SHOGoiN Cell Methylome: GSM1370533
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370533 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP041257 | SRP041257_M12 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Secondary oocyte (Ovarian follicle) | Mouse | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000109354 | Olfr706 | NA | 4.8074 | 0.0000 |
| 2 | ENSMUSG00000105566 | Obox4-ps4 | oocyte specific homeobox 4, pseudogene 4 | 3.0000 | 0.0000 |
| 3 | ENSMUSG00000052471 | Gm9881 | NA | 2.9251 | 0.0000 |
| 4 | ENSMUSG00000103509 | Gm38372 | predicted gene, 38372 | 2.6340 | 0.0000 |
| 5 | ENSMUSG00000107745 | Gm43917 | predicted gene, 43917 | 2.5850 | 0.0000 |
| 6 | ENSMUSG00000089589 | Gm23343 | predicted gene, 23343 | 2.4594 | 0.0000 |
| 7 | ENSMUSG00000088654 | Gm24850 | predicted gene, 24850 | 2.3900 | 0.0000 |
| 8 | ENSMUSG00000081531 | Vmn1r-ps113 | vomeronasal 1 receptor, pseudogene 113 | 2.3219 | 0.0006 |
| 9 | ENSMUSG00000093385 | A330044P14Rik | RIKEN cDNA A330044P14 gene | 2.3219 | 0.0006 |
| 10 | ENSMUSG00000110047 | A230085B16Rik | RIKEN cDNA A230085B16 gene | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000087318 | Gm12114 | predicted gene 12114 | -1.7982 | 0.0162 |
| 50997 | ENSMUSG00000076944 | Gm22064 | predicted gene, 22064 | -1.7979 | 0.0960 |
| 50996 | ENSMUSG00000065047 | Gm24045 | predicted gene, 24045 | -1.7968 | 0.0000 |
| 50995 | ENSMUSG00000112301 | Gm10752 | NA | -1.7957 | 0.0000 |
| 50994 | ENSMUSG00000068391 | Chrac1 | Chromatin accessibility complex protein 1 | -1.7956 | 0.0001 |
| 50993 | ENSMUSG00000087178 | A230056P14Rik | RIKEN cDNA A230056P14 gene | -1.7944 | 0.0008 |
| 50992 | ENSMUSG00000108921 | Gm4083 | predicted gene 4083 | -1.7925 | 1.0000 |
| 50991 | ENSMUSG00000108089 | Gm3148 | predicted gene 3148 | -1.7925 | 0.3779 |
| 50990 | ENSMUSG00000107022 | Gm36669 | predicted gene, 36669 | -1.7925 | 1.0000 |
| 50989 | ENSMUSG00000105314 | Ranbp2-ps11 | RAN binding protein 2, pseudogene 11 | -1.7925 | 1.0000 |
