Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370533

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1370533 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP041257	SRP041257_M12	Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity	Methylome	Secondary oocyte (Ovarian follicle)	Mouse	Genitalia	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000109354	Olfr706	olfactory receptor 706	4.8074	0.0000
2	ENSMUSG00000105566	Obox4-ps4	oocyte specific homeobox 4, pseudogene 4	3.0000	0.0000
4	ENSMUSG00000103509	Gm38372	predicted gene, 38372	2.6340	0.0000
5	ENSMUSG00000107745	Gm43917	predicted gene, 43917	2.5850	0.0000
6	ENSMUSG00000089589	Gm23343	predicted gene, 23343	2.4594	0.0000
7	ENSMUSG00000088654	Gm24850	predicted gene, 24850	2.3900	0.0000
8	ENSMUSG00000081531	Vmn1r-ps113	vomeronasal 1 receptor, pseudogene 113	2.3219	0.0006
9	ENSMUSG00000093385	A330044P14Rik	RIKEN cDNA A330044P14 gene	2.3219	0.0006
10	ENSMUSG00000110047	A230085B16Rik	RIKEN cDNA A230085B16 gene	2.3219	0.0000
47072	ENSMUSG00000097691	9030616G12Rik	RIKEN cDNA 9030616G12 gene	-1.2500	0.5997

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000111465	Gm47113	predicted gene, 47113	-1.2500	0.5997
47080	ENSMUSG00000110957	Gm7439	predicted gene 7439	-1.2500	0.5997
47079	ENSMUSG00000109014	Gm44546	predicted gene 44546	-1.2500	0.0960
47078	ENSMUSG00000108433	Gm19761	predicted gene, 19761	-1.2500	0.2341
47077	ENSMUSG00000106259	Trav11n	T cell receptor alpha variable 11N	-1.2500	0.2341
47076	ENSMUSG00000104189	Gm37822	predicted gene, 37822	-1.2500	0.5997
47075	ENSMUSG00000103960	Gm37119	predicted gene, 37119	-1.2500	0.2341
47074	ENSMUSG00000103340	Ighv1-1	immunoglobulin heavy variable V1-1	-1.2500	0.5997
47073	ENSMUSG00000101506	Gm28385	predicted gene 28385	-1.2500	0.5997
47072	ENSMUSG00000097691	9030616G12Rik	RIKEN cDNA 9030616G12 gene	-1.2500	0.5997

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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