SHOGoiN Cell Methylome: GSM1370533
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370533 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP041257 | SRP041257_M12 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Secondary oocyte (Ovarian follicle) | Mouse | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000109354 | Olfr706 | olfactory receptor 706 | 4.8074 | 0.0000 |
| 2 | ENSMUSG00000105566 | Obox4-ps4 | oocyte specific homeobox 4, pseudogene 4 | 3.0000 | 0.0000 |
| 4 | ENSMUSG00000103509 | Gm38372 | predicted gene, 38372 | 2.6340 | 0.0000 |
| 5 | ENSMUSG00000107745 | Gm43917 | predicted gene, 43917 | 2.5850 | 0.0000 |
| 6 | ENSMUSG00000089589 | Gm23343 | predicted gene, 23343 | 2.4594 | 0.0000 |
| 7 | ENSMUSG00000088654 | Gm24850 | predicted gene, 24850 | 2.3900 | 0.0000 |
| 8 | ENSMUSG00000081531 | Vmn1r-ps113 | vomeronasal 1 receptor, pseudogene 113 | 2.3219 | 0.0006 |
| 9 | ENSMUSG00000093385 | A330044P14Rik | RIKEN cDNA A330044P14 gene | 2.3219 | 0.0006 |
| 10 | ENSMUSG00000110047 | A230085B16Rik | RIKEN cDNA A230085B16 gene | 2.3219 | 0.0000 |
| 50845 | ENSMUSG00000096583 | Mir669a-1 | microRNA 669a-1 | -1.6667 | 0.6047 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000109646 | Gm45523 | predicted gene 45523 | -1.6667 | 0.6047 |
| 50853 | ENSMUSG00000109433 | Olfr1435-ps1 | olfactory receptor 1435, pseudogene 1 | -1.6667 | 0.6047 |
| 50852 | ENSMUSG00000106031 | Gm8848 | predicted gene 8848 | -1.6667 | 0.6047 |
| 50851 | ENSMUSG00000105546 | Mir669a-4 | microRNA 669a-4 | -1.6667 | 0.6047 |
| 50850 | ENSMUSG00000105324 | Gm42705 | predicted gene 42705 | -1.6667 | 0.6047 |
| 50849 | ENSMUSG00000104933 | Mir466e | microRNA 466e | -1.6667 | 0.6047 |
| 50848 | ENSMUSG00000104734 | Mir669a-5 | microRNA 669a-5 | -1.6667 | 0.6047 |
| 50847 | ENSMUSG00000104561 | Mir466c-1 | microRNA 466c-1 | -1.6667 | 0.6047 |
| 50846 | ENSMUSG00000096624 | Mir467a-1 | microRNA 467a-1 | -1.6667 | 0.6047 |
| 50845 | ENSMUSG00000096583 | Mir669a-1 | microRNA 669a-1 | -1.6667 | 0.6047 |
