Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370533

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370533


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M12Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 4.8074 0.0000
2 ENSMUSG00000105566 Obox4-ps4 oocyte specific homeobox 4, pseudogene 4 3.0000 0.0000
4 ENSMUSG00000103509 Gm38372 predicted gene, 38372 2.6340 0.0000
5 ENSMUSG00000107745 Gm43917 predicted gene, 43917 2.5850 0.0000
6 ENSMUSG00000089589 Gm23343 predicted gene, 23343 2.4594 0.0000
7 ENSMUSG00000088654 Gm24850 predicted gene, 24850 2.3900 0.0000
8 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.3219 0.0006
9 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.3219 0.0006
10 ENSMUSG00000110047 A230085B16Rik RIKEN cDNA A230085B16 gene 2.3219 0.0000
47072 ENSMUSG00000097691 9030616G12Rik RIKEN cDNA 9030616G12 gene -1.2500 0.5997

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000111465 Gm47113 predicted gene, 47113 -1.2500 0.5997
47080 ENSMUSG00000110957 Gm7439 predicted gene 7439 -1.2500 0.5997
47079 ENSMUSG00000109014 Gm44546 predicted gene 44546 -1.2500 0.0960
47078 ENSMUSG00000108433 Gm19761 predicted gene, 19761 -1.2500 0.2341
47077 ENSMUSG00000106259 Trav11n T cell receptor alpha variable 11N -1.2500 0.2341
47076 ENSMUSG00000104189 Gm37822 predicted gene, 37822 -1.2500 0.5997
47075 ENSMUSG00000103960 Gm37119 predicted gene, 37119 -1.2500 0.2341
47074 ENSMUSG00000103340 Ighv1-1 immunoglobulin heavy variable V1-1 -1.2500 0.5997
47073 ENSMUSG00000101506 Gm28385 predicted gene 28385 -1.2500 0.5997
47072 ENSMUSG00000097691 9030616G12Rik RIKEN cDNA 9030616G12 gene -1.2500 0.5997

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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