Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370535

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370535


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M13Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 5.3576 0.0000
2 ENSMUSG00000112452 Gm48075 predicted gene, 48075 3.9069 0.0000
3 ENSMUSG00000104688 Gm18702 predicted gene, 18702 2.5850 0.0017
4 ENSMUSG00000066030 Oog2 oogenesin 2 2.3219 0.0062
5 ENSMUSG00000108070 Gm43872 predicted gene, 43872 2.3219 0.0062
6 ENSMUSG00000112691 Gm8681 predicted gene 8681 2.2146 0.0000
7 ENSMUSG00000067186 Olfr132 olfactory receptor 132 2.0984 0.0000
8 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.0850 0.0000
9 ENSMUSG00000016529 Il10 interleukin 10 2.0000 0.0222
10 ENSMUSG00000022061 Nkx3-1 NK3 homeobox 1 2.0000 0.0005

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000111334 Gm30015 predicted gene, 30015 -1.0334 0.0000
47080 ENSMUSG00000028736 Pax7 paired box 7 -1.0333 0.0000
47079 ENSMUSG00000028946 Hes3 hes family bHLH transcription factor 3 -1.0333 0.0000
47078 ENSMUSG00000022529 Zfp263 zinc finger protein 263 -1.0332 0.0006
47077 ENSMUSG00000082950 Btf3-ps10 basic transcription factor 3, pseudogene 10 -1.0331 0.0000
47076 ENSMUSG00000032637 Atxn2l ataxin 2-like -1.0331 0.0000
47075 ENSMUSG00000027457 Snph syntaphilin -1.0329 0.0000
47074 ENSMUSG00000085141 Gm13429 predicted gene 13429 -1.0325 0.0034
47073 ENSMUSG00000021189 Atxn3 ataxin 3 -1.0325 0.0034
47072 ENSMUSG00000021124 Vti1b vesicle transport through interaction with t-SNAREs 1B -1.0325 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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