SHOGoiN Cell Methylome: GSM1370535

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370535


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M13Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 5.3576 0.0000
2 ENSMUSG00000112452 Gm48075 predicted gene, 48075 3.9069 0.0000
3 ENSMUSG00000104688 Gm18702 predicted gene, 18702 2.5850 0.0017
4 ENSMUSG00000066030 Oog2 oogenesin 2 2.3219 0.0062
5 ENSMUSG00000108070 Gm43872 predicted gene, 43872 2.3219 0.0062
6 ENSMUSG00000112691 Gm8681 predicted gene 8681 2.2146 0.0000
7 ENSMUSG00000067186 Olfr132 olfactory receptor 132 2.0984 0.0000
8 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.0850 0.0000
9 ENSMUSG00000016529 Il10 interleukin 10 2.0000 0.0222
10 ENSMUSG00000022061 Nkx3-1 NK3 homeobox 1 2.0000 0.0005

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000033377 Palmd palmdelphin -1.9037 0.2021
50853 ENSMUSG00000106707 Gm43748 predicted gene 43748 -1.9001 0.0150
50852 ENSMUSG00000059689 Zfp637 zinc finger protein 637 -1.8971 0.0000
50851 ENSMUSG00000054746 Abca15 ATP-binding cassette, sub-family A (ABC1), member 15 -1.8962 0.0000
50850 ENSMUSG00000025730 Rab40c Rab40C, member RAS oncogene family -1.8949 0.0000
50849 ENSMUSG00000074357 AA386476 expressed sequence AA386476 -1.8915 0.0000
50848 ENSMUSG00000063049 Ing2 inhibitor of growth family, member 2 -1.8915 0.0000
50847 ENSMUSG00000031596 Slc7a2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 -1.8914 0.0000
50846 ENSMUSG00000021264 Yy1 YY1 transcription factor -1.8893 0.0000
50845 ENSMUSG00000086350 B230369F24Rik RIKEN cDNA B230369F24 gene -1.8889 0.0005

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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