Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370536

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370536


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M14Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 3.8074 0.0000
2 ENSMUSG00000103384 Gm37753 predicted gene, 37753 3.1699 0.0000
3 ENSMUSG00000103707 Pcdha6 protocadherin alpha 6 3.1699 0.0000
4 ENSMUSG00000059273 Zc3h4 zinc finger CCCH-type containing 4 2.3999 0.0000
5 ENSMUSG00000109781 Gm45509 predicted gene 45509 2.3999 0.0000
6 ENSMUSG00000110181 Gm45508 predicted gene 45508 2.3999 0.0000
7 ENSMUSG00000090385 Gm7316 predicted gene 7316 2.3219 0.0068
8 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.3219 0.0068
9 ENSMUSG00000109928 Gm45539 predicted gene 45539 2.3219 0.0068
10 ENSMUSG00000029865 Sval1 seminal vesicle antigen-like 1 2.0000 0.0236

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000106446 Gm42970 predicted gene 42970 -1.0000 1.0000
47080 ENSMUSG00000106434 Gm42990 predicted gene 42990 -1.0000 1.0000
47079 ENSMUSG00000106424 Gm34866 predicted gene, 34866 -1.0000 1.0000
47078 ENSMUSG00000106415 Gm42893 predicted gene 42893 -1.0000 1.0000
47077 ENSMUSG00000106407 Gm43439 predicted gene 43439 -1.0000 0.0148
47076 ENSMUSG00000106394 Gm42698 predicted gene 42698 -1.0000 1.0000
47075 ENSMUSG00000106385 Gm42943 predicted gene 42943 -1.0000 1.0000
47074 ENSMUSG00000106369 Gm43355 predicted gene 43355 -1.0000 1.0000
47072 ENSMUSG00000106345 Gm42459 predicted gene 42459 -1.0000 0.5623
10 ENSMUSG00000029865 Sval1 seminal vesicle antigen-like 1 2.0000 0.0236

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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