SHOGoiN Cell Methylome: GSM1370536

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370536


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M14Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 3.8074 0.0000
2 ENSMUSG00000103384 Gm37753 predicted gene, 37753 3.1699 0.0000
3 ENSMUSG00000103707 Pcdha6 protocadherin alpha 6 3.1699 0.0000
4 ENSMUSG00000059273 Zc3h4 zinc finger CCCH-type containing 4 2.3999 0.0000
5 ENSMUSG00000109781 Gm45509 predicted gene 45509 2.3999 0.0000
6 ENSMUSG00000110181 Gm45508 predicted gene 45508 2.3999 0.0000
7 ENSMUSG00000090385 Gm7316 predicted gene 7316 2.3219 0.0068
8 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.3219 0.0068
9 ENSMUSG00000109928 Gm45539 predicted gene 45539 2.3219 0.0068
10 ENSMUSG00000029865 Sval1 seminal vesicle antigen-like 1 2.0000 0.0236

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000101565 1700003L19Rik RIKEN cDNA 1700003L19 gene -1.7500 0.0724
50853 ENSMUSG00000082884 Gm13339 predicted gene 13339 -1.7463 0.0000
50852 ENSMUSG00000048644 Ctxn1 cortexin 1 -1.7325 0.0001
50851 ENSMUSG00000108300 Gm44539 predicted gene 44539 -1.7048 0.0088
50850 ENSMUSG00000037580 Gch1 GTP cyclohydrolase 1 -1.7043 0.0000
50849 ENSMUSG00000019969 Psen1 presenilin 1 -1.7037 0.0000
50848 ENSMUSG00000095448 Olfr859 olfactory receptor 859 -1.7028 0.0068
50847 ENSMUSG00000075486 Commd6 COMM domain containing 6 -1.6992 0.0000
50846 ENSMUSG00000083563 Gm13340 predicted gene 13340 -1.6886 0.0000
50845 ENSMUSG00000099403 Gm29599 predicted gene 29599 -1.6882 0.0022

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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