SHOGoiN Cell Methylome: GSM1370537

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370537


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M15Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 4.6439 0.0000
2 ENSMUSG00000053678 Defb40 defensin beta 40 4.6439 0.0000
3 ENSMUSG00000109354 Olfr706 olfactory receptor 706 3.4164 0.0000
4 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 3.3219 0.0001
5 ENSMUSG00000055782 Abcd2 ATP-binding cassette, sub-family D (ALD), member 2 3.1699 0.0000
6 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.8074 0.0017
7 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.8074 0.0017
8 ENSMUSG00000029096 Htra3 HtrA serine peptidase 3 2.5850 0.0050
10 ENSMUSG00000025283 Sat1 spermidine/spermine N1-acetyl transferase 1 2.3219 0.0143
50845 ENSMUSG00000034432 Cops8 COP9 signalosome subunit 8 -1.8389 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000025902 Sox17 SRY (sex determining region Y)-box 17 -1.8976 0.0000
50853 ENSMUSG00000041415 Dicer1 dicer 1, ribonuclease type III -1.8962 0.0000
50852 ENSMUSG00000021067 Sav1 salvador family WW domain containing 1 -1.8949 0.0000
50851 ENSMUSG00000004980 Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 -1.8947 0.0000
50850 ENSMUSG00000029372 Ppbp pro-platelet basic protein -1.8703 0.0000
50849 ENSMUSG00000037965 Zc3h7a zinc finger CCCH type containing 7 A -1.8656 0.0000
50848 ENSMUSG00000090100 Ttbk2 tau tubulin kinase 2 -1.8629 0.0000
50847 ENSMUSG00000095632 Vmn1r175 vomeronasal 1 receptor 175 -1.8617 0.0003
50846 ENSMUSG00000102101 Zbtb11os1 zinc finger and BTB domain containing 11, opposite strand 1 -1.8494 0.0000
50845 ENSMUSG00000034432 Cops8 COP9 signalosome subunit 8 -1.8389 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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