Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370537

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370537


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M15Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 4.6439 0.0000
2 ENSMUSG00000053678 Defb40 defensin beta 40 4.6439 0.0000
3 ENSMUSG00000109354 Olfr706 olfactory receptor 706 3.4164 0.0000
4 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 3.3219 0.0001
5 ENSMUSG00000055782 Abcd2 ATP-binding cassette, sub-family D (ALD), member 2 3.1699 0.0000
6 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.8074 0.0017
7 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.8074 0.0017
8 ENSMUSG00000029096 Htra3 HtrA serine peptidase 3 2.5850 0.0050
10 ENSMUSG00000025283 Sat1 spermidine/spermine N1-acetyl transferase 1 2.3219 0.0143
47074 ENSMUSG00000096183 Gm3727 predicted gene 3727 -1.0000 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47080 ENSMUSG00000096326 Ighv1-78 immunoglobulin heavy variable 1-78 -1.0000 1.0000
47079 ENSMUSG00000096299 Gm21814 predicted gene, 21814 -1.0000 0.5560
47077 ENSMUSG00000096250 Ighd2-6 immunoglobulin heavy diversity 2-6 -1.0000 1.0000
47076 ENSMUSG00000096217 Gm4904 predicted gene 4904 -1.0000 1.0000
47075 ENSMUSG00000096216 Gm21959 predicted gene, 21959 -1.0000 1.0000
47074 ENSMUSG00000096183 Gm3727 predicted gene 3727 -1.0000 1.0000
10 ENSMUSG00000025283 Sat1 spermidine/spermine N1-acetyl transferase 1 2.3219 0.0143
8 ENSMUSG00000029096 Htra3 HtrA serine peptidase 3 2.5850 0.0050
7 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.8074 0.0017
6 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.8074 0.0017

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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