Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1370537
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370537
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M15
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000040370
Etfrf1
electron transfer flavoprotein regulatory factor 1
4.6439
0.0000
2
ENSMUSG00000053678
Defb40
defensin beta 40
4.6439
0.0000
3
ENSMUSG00000109354
Olfr706
olfactory receptor 706
3.4164
0.0000
4
ENSMUSG00000081531
Vmn1r-ps113
vomeronasal 1 receptor, pseudogene 113
3.3219
0.0001
5
ENSMUSG00000055782
Abcd2
ATP-binding cassette, sub-family D (ALD), member 2
3.1699
0.0000
6
ENSMUSG00000093385
A330044P14Rik
RIKEN cDNA A330044P14 gene
2.8074
0.0017
7
ENSMUSG00000110158
Gm45690
predicted gene 45690
2.8074
0.0017
8
ENSMUSG00000029096
Htra3
HtrA serine peptidase 3
2.5850
0.0050
10
ENSMUSG00000025283
Sat1
spermidine/spermine N1-acetyl transferase 1
2.3219
0.0143
47074
ENSMUSG00000096183
Gm3727
predicted gene 3727
-1.0000
1.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47080
ENSMUSG00000096326
Ighv1-78
immunoglobulin heavy variable 1-78
-1.0000
1.0000
47079
ENSMUSG00000096299
Gm21814
predicted gene, 21814
-1.0000
0.5560
47077
ENSMUSG00000096250
Ighd2-6
immunoglobulin heavy diversity 2-6
-1.0000
1.0000
47076
ENSMUSG00000096217
Gm4904
predicted gene 4904
-1.0000
1.0000
47075
ENSMUSG00000096216
Gm21959
predicted gene, 21959
-1.0000
1.0000
47074
ENSMUSG00000096183
Gm3727
predicted gene 3727
-1.0000
1.0000
10
ENSMUSG00000025283
Sat1
spermidine/spermine N1-acetyl transferase 1
2.3219
0.0143
8
ENSMUSG00000029096
Htra3
HtrA serine peptidase 3
2.5850
0.0050
7
ENSMUSG00000110158
Gm45690
predicted gene 45690
2.8074
0.0017
6
ENSMUSG00000093385
A330044P14Rik
RIKEN cDNA A330044P14 gene
2.8074
0.0017
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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