Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370537

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1370537 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP041257	SRP041257_M15	Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000040370	Etfrf1	electron transfer flavoprotein regulatory factor 1	4.6439	0.0000
2	ENSMUSG00000053678	Defb40	defensin beta 40	4.6439	0.0000
3	ENSMUSG00000109354	Olfr706	olfactory receptor 706	3.4164	0.0000
4	ENSMUSG00000081531	Vmn1r-ps113	vomeronasal 1 receptor, pseudogene 113	3.3219	0.0001
5	ENSMUSG00000055782	Abcd2	ATP-binding cassette, sub-family D (ALD), member 2	3.1699	0.0000
6	ENSMUSG00000093385	A330044P14Rik	RIKEN cDNA A330044P14 gene	2.8074	0.0017
7	ENSMUSG00000110158	Gm45690	predicted gene 45690	2.8074	0.0017
8	ENSMUSG00000029096	Htra3	HtrA serine peptidase 3	2.5850	0.0050
10	ENSMUSG00000025283	Sat1	spermidine/spermine N1-acetyl transferase 1	2.3219	0.0143
47074	ENSMUSG00000096183	Gm3727	predicted gene 3727	-1.0000	1.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47080	ENSMUSG00000096326	Ighv1-78	immunoglobulin heavy variable 1-78	-1.0000	1.0000
47079	ENSMUSG00000096299	Gm21814	predicted gene, 21814	-1.0000	0.5560
47077	ENSMUSG00000096250	Ighd2-6	immunoglobulin heavy diversity 2-6	-1.0000	1.0000
47076	ENSMUSG00000096217	Gm4904	predicted gene 4904	-1.0000	1.0000
47075	ENSMUSG00000096216	Gm21959	predicted gene, 21959	-1.0000	1.0000
47074	ENSMUSG00000096183	Gm3727	predicted gene 3727	-1.0000	1.0000
10	ENSMUSG00000025283	Sat1	spermidine/spermine N1-acetyl transferase 1	2.3219	0.0143
8	ENSMUSG00000029096	Htra3	HtrA serine peptidase 3	2.5850	0.0050
7	ENSMUSG00000110158	Gm45690	predicted gene 45690	2.8074	0.0017
6	ENSMUSG00000093385	A330044P14Rik	RIKEN cDNA A330044P14 gene	2.8074	0.0017

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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