SHOGoiN Cell Methylome: GSM1370537
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370537 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M15 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000040370 | Etfrf1 | electron transfer flavoprotein regulatory factor 1 | 4.6439 | 0.0000 |
| 2 | ENSMUSG00000053678 | Defb40 | defensin beta 40 | 4.6439 | 0.0000 |
| 3 | ENSMUSG00000109354 | Olfr706 | olfactory receptor 706 | 3.4164 | 0.0000 |
| 4 | ENSMUSG00000081531 | Vmn1r-ps113 | vomeronasal 1 receptor, pseudogene 113 | 3.3219 | 0.0001 |
| 5 | ENSMUSG00000055782 | Abcd2 | ATP-binding cassette, sub-family D (ALD), member 2 | 3.1699 | 0.0000 |
| 6 | ENSMUSG00000093385 | A330044P14Rik | RIKEN cDNA A330044P14 gene | 2.8074 | 0.0017 |
| 7 | ENSMUSG00000110158 | Gm45690 | predicted gene 45690 | 2.8074 | 0.0017 |
| 8 | ENSMUSG00000029096 | Htra3 | HtrA serine peptidase 3 | 2.5850 | 0.0050 |
| 10 | ENSMUSG00000025283 | Sat1 | spermidine/spermine N1-acetyl transferase 1 | 2.3219 | 0.0143 |
| 50845 | ENSMUSG00000034432 | Cops8 | COP9 signalosome subunit 8 | -1.8389 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000025902 | Sox17 | SRY (sex determining region Y)-box 17 | -1.8976 | 0.0000 |
| 50853 | ENSMUSG00000041415 | Dicer1 | dicer 1, ribonuclease type III | -1.8962 | 0.0000 |
| 50852 | ENSMUSG00000021067 | Sav1 | salvador family WW domain containing 1 | -1.8949 | 0.0000 |
| 50851 | ENSMUSG00000004980 | Hnrnpa2b1 | heterogeneous nuclear ribonucleoprotein A2/B1 | -1.8947 | 0.0000 |
| 50850 | ENSMUSG00000029372 | Ppbp | pro-platelet basic protein | -1.8703 | 0.0000 |
| 50849 | ENSMUSG00000037965 | Zc3h7a | zinc finger CCCH type containing 7 A | -1.8656 | 0.0000 |
| 50848 | ENSMUSG00000090100 | Ttbk2 | tau tubulin kinase 2 | -1.8629 | 0.0000 |
| 50847 | ENSMUSG00000095632 | Vmn1r175 | vomeronasal 1 receptor 175 | -1.8617 | 0.0003 |
| 50846 | ENSMUSG00000102101 | Zbtb11os1 | zinc finger and BTB domain containing 11, opposite strand 1 | -1.8494 | 0.0000 |
| 50845 | ENSMUSG00000034432 | Cops8 | COP9 signalosome subunit 8 | -1.8389 | 0.0000 |
