SHOGoiN Cell Methylome: GSM1370538

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370538


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M16Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 5.4919 0.0000
2 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 5.2479 0.0000
3 ENSMUSG00000102836 Gm37013 predicted gene, 37013 3.8074 0.0000
4 ENSMUSG00000103125 Gm37388 predicted gene, 37388 3.8074 0.0000
5 ENSMUSG00000103384 Gm37753 predicted gene, 37753 3.8074 0.0000
6 ENSMUSG00000103707 Pcdha6 protocadherin alpha 6 3.8074 0.0000
7 ENSMUSG00000104318 Pcdha7 protocadherin alpha 7 3.8074 0.0000
8 ENSMUSG00000047419 Cmya5 cardiomyopathy associated 5 3.3219 0.0000
9 ENSMUSG00000064570 Gm25800 predicted gene, 25800 3.0000 0.0000
10 ENSMUSG00000083668 Gm5648 predicted pseudogene 5648 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000045952 Gm5548 predicted pseudogene 5548 -2.0000 1.0000
50853 ENSMUSG00000041014 Nrg3 neuregulin 3 -2.0000 1.0000
50852 ENSMUSG00000038128 Camk4 calcium/calmodulin-dependent protein kinase IV -2.0000 0.3488
50851 ENSMUSG00000033219 Gm9758 predicted gene 9758 -2.0000 0.3488
50850 ENSMUSG00000015854 Cd5l CD5 antigen-like -2.0000 1.0000
50849 ENSMUSG00000107561 Gm44264 predicted gene, 44264 -1.9932 0.0314
50848 ENSMUSG00000110669 Gm10060 predicted gene 10060 -1.9789 0.0000
50847 ENSMUSG00000100923 Olfr10 olfactory receptor 10 -1.9788 0.0119
50846 ENSMUSG00000109595 Gm18204 predicted gene, 18204 -1.9767 0.0310
50845 ENSMUSG00000024774 Ankrd22 ankyrin repeat domain 22 -1.9707 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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