Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370539

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1370539 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP041257	SRP041257_M17	Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000069390	Olfr707	olfactory receptor 707	5.2479	0.0000
2	ENSMUSG00000081531	Vmn1r-ps113	vomeronasal 1 receptor, pseudogene 113	3.5850	0.0000
3	ENSMUSG00000078784	Rbis	ribosomal biogenesis factor	3.4594	0.0000
4	ENSMUSG00000027801	Tm4sf4	transmembrane 4 superfamily member 4	2.8074	0.0007
5	ENSMUSG00000089849	Runx2os2	runt related transcription factor 2, opposite strand 2	2.8074	0.0007
6	ENSMUSG00000105218	Gm38413	predicted gene, 38413	2.7611	0.0000
7	ENSMUSG00000103465	Gm37617	predicted gene, 37617	2.5850	0.0022
8	ENSMUSG00000004542	Psg19	pregnancy specific glycoprotein 19	2.3219	0.0075
9	ENSMUSG00000031355	Arhgap6	Rho GTPase activating protein 6	2.3219	0.0000
10	ENSMUSG00000077473	Gm24790	predicted gene, 24790	2.3219	0.0075

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000022240	Ctnnd2	catenin (cadherin associated protein), delta 2	-1.0843	0.0096
47080	ENSMUSG00000059878	Zfp422	zinc finger protein 422	-1.0843	0.0035
47079	ENSMUSG00000003438	Timm50	translocase of inner mitochondrial membrane 50	-1.0840	0.0000
47078	ENSMUSG00000038375	Trp53inp2	transformation related protein 53 inducible nuclear protein 2	-1.0839	0.0056
47077	ENSMUSG00000109587	Gm31105	predicted gene, 31105	-1.0838	0.0000
47076	ENSMUSG00000085111	Ascl4	achaete-scute family bHLH transcription factor 4	-1.0838	0.0000
47075	ENSMUSG00000025469	Msx3	msh homeobox 3	-1.0837	0.0000
47074	ENSMUSG00000004897	Hdgf	heparin binding growth factor	-1.0837	0.0000
47073	ENSMUSG00000074228	Gm10645	predicted gene 10645	-1.0837	0.0008
47072	ENSMUSG00000003051	Elf3	E74-like factor 3	-1.0836	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...