Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370539

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370539


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M17Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000069390 Olfr707 olfactory receptor 707 5.2479 0.0000
2 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 3.5850 0.0000
3 ENSMUSG00000078784 Rbis ribosomal biogenesis factor 3.4594 0.0000
4 ENSMUSG00000027801 Tm4sf4 transmembrane 4 superfamily member 4 2.8074 0.0007
5 ENSMUSG00000089849 Runx2os2 runt related transcription factor 2, opposite strand 2 2.8074 0.0007
6 ENSMUSG00000105218 Gm38413 predicted gene, 38413 2.7611 0.0000
7 ENSMUSG00000103465 Gm37617 predicted gene, 37617 2.5850 0.0022
8 ENSMUSG00000004542 Psg19 pregnancy specific glycoprotein 19 2.3219 0.0075
9 ENSMUSG00000031355 Arhgap6 Rho GTPase activating protein 6 2.3219 0.0000
10 ENSMUSG00000077473 Gm24790 predicted gene, 24790 2.3219 0.0075

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000022240 Ctnnd2 catenin (cadherin associated protein), delta 2 -1.0843 0.0096
47080 ENSMUSG00000059878 Zfp422 zinc finger protein 422 -1.0843 0.0035
47079 ENSMUSG00000003438 Timm50 translocase of inner mitochondrial membrane 50 -1.0840 0.0000
47078 ENSMUSG00000038375 Trp53inp2 transformation related protein 53 inducible nuclear protein 2 -1.0839 0.0056
47077 ENSMUSG00000109587 Gm31105 predicted gene, 31105 -1.0838 0.0000
47076 ENSMUSG00000085111 Ascl4 achaete-scute family bHLH transcription factor 4 -1.0838 0.0000
47075 ENSMUSG00000025469 Msx3 msh homeobox 3 -1.0837 0.0000
47074 ENSMUSG00000004897 Hdgf heparin binding growth factor -1.0837 0.0000
47073 ENSMUSG00000074228 Gm10645 predicted gene 10645 -1.0837 0.0008
47072 ENSMUSG00000003051 Elf3 E74-like factor 3 -1.0836 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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