Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1370539
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370539
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M17
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000069390
Olfr707
olfactory receptor 707
5.2479
0.0000
2
ENSMUSG00000081531
Vmn1r-ps113
vomeronasal 1 receptor, pseudogene 113
3.5850
0.0000
3
ENSMUSG00000078784
Rbis
ribosomal biogenesis factor
3.4594
0.0000
4
ENSMUSG00000027801
Tm4sf4
transmembrane 4 superfamily member 4
2.8074
0.0007
5
ENSMUSG00000089849
Runx2os2
runt related transcription factor 2, opposite strand 2
2.8074
0.0007
6
ENSMUSG00000105218
Gm38413
predicted gene, 38413
2.7611
0.0000
7
ENSMUSG00000103465
Gm37617
predicted gene, 37617
2.5850
0.0022
8
ENSMUSG00000004542
Psg19
pregnancy specific glycoprotein 19
2.3219
0.0075
9
ENSMUSG00000031355
Arhgap6
Rho GTPase activating protein 6
2.3219
0.0000
10
ENSMUSG00000077473
Gm24790
predicted gene, 24790
2.3219
0.0075
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000022240
Ctnnd2
catenin (cadherin associated protein), delta 2
-1.0843
0.0096
47080
ENSMUSG00000059878
Zfp422
zinc finger protein 422
-1.0843
0.0035
47079
ENSMUSG00000003438
Timm50
translocase of inner mitochondrial membrane 50
-1.0840
0.0000
47078
ENSMUSG00000038375
Trp53inp2
transformation related protein 53 inducible nuclear protein 2
-1.0839
0.0056
47077
ENSMUSG00000109587
Gm31105
predicted gene, 31105
-1.0838
0.0000
47076
ENSMUSG00000085111
Ascl4
achaete-scute family bHLH transcription factor 4
-1.0838
0.0000
47075
ENSMUSG00000025469
Msx3
msh homeobox 3
-1.0837
0.0000
47074
ENSMUSG00000004897
Hdgf
heparin binding growth factor
-1.0837
0.0000
47073
ENSMUSG00000074228
Gm10645
predicted gene 10645
-1.0837
0.0008
47072
ENSMUSG00000003051
Elf3
E74-like factor 3
-1.0836
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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