SHOGoiN Cell Methylome: GSM1370539

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370539


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M17Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000069390 Olfr707 olfactory receptor 707 5.2479 0.0000
2 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 3.5850 0.0000
3 ENSMUSG00000078784 1810022K09Rik RIKEN cDNA 1810022K09 gene 3.4594 0.0000
4 ENSMUSG00000027801 Tm4sf4 transmembrane 4 superfamily member 4 2.8074 0.0007
5 ENSMUSG00000089849 Runx2os2 runt related transcription factor 2, opposite strand 2 2.8074 0.0007
6 ENSMUSG00000105218 Gm38413 predicted gene, 38413 2.7611 0.0000
7 ENSMUSG00000103465 Gm37617 predicted gene, 37617 2.5850 0.0022
8 ENSMUSG00000004542 Psg19 pregnancy specific glycoprotein 19 2.3219 0.0075
9 ENSMUSG00000031355 Arhgap6 Rho GTPase activating protein 6 2.3219 0.0000
10 ENSMUSG00000077473 Gm24790 predicted gene, 24790 2.3219 0.0075

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000106832 Gm42632 predicted gene 42632 -1.9543 0.0000
50853 ENSMUSG00000106895 Gm4754 predicted gene 4754 -1.9534 0.1895
50852 ENSMUSG00000071815 Fthl17e ferritin, heavy polypeptide-like 17, member E -1.9534 0.1895
50851 ENSMUSG00000104025 E330040D14Rik RIKEN cDNA E330040D14 gene -1.9515 0.0000
50850 ENSMUSG00000099032 Tcf24 transcription factor 24 -1.9515 0.0000
50849 ENSMUSG00000097840 Gm26756 predicted gene, 26756 -1.9438 0.0000
50848 ENSMUSG00000085321 4930412F09Rik RIKEN cDNA 4930412F09 gene -1.9436 0.0000
50847 ENSMUSG00000054779 Fgf2os fibroblast growth factor 2, opposite strand -1.9412 0.0000
50846 ENSMUSG00000087571 Gm15202 predicted gene 15202 -1.9406 0.0031
50845 ENSMUSG00000094483 Purb purine rich element binding protein B -1.9391 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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