SHOGoiN Cell Methylome: GSM1370539
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370539 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M17 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000069390 | Olfr707 | olfactory receptor 707 | 5.2479 | 0.0000 |
| 2 | ENSMUSG00000081531 | Vmn1r-ps113 | vomeronasal 1 receptor, pseudogene 113 | 3.5850 | 0.0000 |
| 3 | ENSMUSG00000078784 | 1810022K09Rik | RIKEN cDNA 1810022K09 gene | 3.4594 | 0.0000 |
| 4 | ENSMUSG00000027801 | Tm4sf4 | transmembrane 4 superfamily member 4 | 2.8074 | 0.0007 |
| 5 | ENSMUSG00000089849 | Runx2os2 | runt related transcription factor 2, opposite strand 2 | 2.8074 | 0.0007 |
| 6 | ENSMUSG00000105218 | Gm38413 | predicted gene, 38413 | 2.7611 | 0.0000 |
| 7 | ENSMUSG00000103465 | Gm37617 | predicted gene, 37617 | 2.5850 | 0.0022 |
| 8 | ENSMUSG00000004542 | Psg19 | pregnancy specific glycoprotein 19 | 2.3219 | 0.0075 |
| 9 | ENSMUSG00000031355 | Arhgap6 | Rho GTPase activating protein 6 | 2.3219 | 0.0000 |
| 10 | ENSMUSG00000077473 | Gm24790 | predicted gene, 24790 | 2.3219 | 0.0075 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000106832 | Gm42632 | predicted gene 42632 | -1.9543 | 0.0000 |
| 50853 | ENSMUSG00000106895 | Gm4754 | predicted gene 4754 | -1.9534 | 0.1895 |
| 50852 | ENSMUSG00000071815 | Fthl17e | ferritin, heavy polypeptide-like 17, member E | -1.9534 | 0.1895 |
| 50851 | ENSMUSG00000104025 | E330040D14Rik | RIKEN cDNA E330040D14 gene | -1.9515 | 0.0000 |
| 50850 | ENSMUSG00000099032 | Tcf24 | transcription factor 24 | -1.9515 | 0.0000 |
| 50849 | ENSMUSG00000097840 | Gm26756 | predicted gene, 26756 | -1.9438 | 0.0000 |
| 50848 | ENSMUSG00000085321 | 4930412F09Rik | RIKEN cDNA 4930412F09 gene | -1.9436 | 0.0000 |
| 50847 | ENSMUSG00000054779 | Fgf2os | fibroblast growth factor 2, opposite strand | -1.9412 | 0.0000 |
| 50846 | ENSMUSG00000087571 | Gm15202 | predicted gene 15202 | -1.9406 | 0.0031 |
| 50845 | ENSMUSG00000094483 | Purb | purine rich element binding protein B | -1.9391 | 0.0000 |
