SHOGoiN Cell Methylome: GSM1370540

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370540


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M18Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000069390 Olfr707 olfactory receptor 707 6.3038 0.0000
2 ENSMUSG00000109354 Olfr706 olfactory receptor 706 6.3038 0.0000
3 ENSMUSG00000053678 Defb40 defensin beta 40 5.3219 0.0000
4 ENSMUSG00000089589 Gm23343 predicted gene, 23343 4.1699 0.0000
5 ENSMUSG00000026285 Pdcd1 programmed cell death 1 4.0646 0.0000
6 ENSMUSG00000110158 Gm45690 predicted gene 45690 3.8074 0.0000
7 ENSMUSG00000055782 Abcd2 ATP-binding cassette, sub-family D (ALD), member 2 3.5516 0.0000
8 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 3.3219 0.0000
9 ENSMUSG00000098114 Gm26957 predicted gene, 26957 3.3219 0.0000
10 ENSMUSG00000103465 Gm37617 predicted gene, 37617 3.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000106924 Gm42857 predicted gene 42857 -2.0000 1.0000
50853 ENSMUSG00000106425 Mir873b microRNA 873b -2.0000 1.0000
50852 ENSMUSG00000106286 Gm43424 predicted gene 43424 -2.0000 1.0000
50851 ENSMUSG00000106134 Gm42493 predicted gene 42493 -2.0000 1.0000
50850 ENSMUSG00000105929 Gm43693 predicted gene 43693 -2.0000 1.0000
50849 ENSMUSG00000105896 Gm43311 predicted gene 43311 -2.0000 1.0000
50848 ENSMUSG00000105883 Igkv4-65 immunoglobulin kappa chain variable 4-65 -2.0000 1.0000
50847 ENSMUSG00000105629 Trav7n-5 T cell receptor alpha variable 7N-5 -2.0000 1.0000
50846 ENSMUSG00000105191 Gm4644 predicted gene 4644 -2.0000 1.0000
50845 ENSMUSG00000104683 Gm44385 predicted gene, 44385 -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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