SHOGoiN Cell Methylome: GSM1370541
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370541 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M19 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000105290 | Gm43528 | predicted gene 43528 | 5.7004 | 0.0000 |
| 2 | ENSMUSG00000109354 | Olfr706 | NA | 4.5236 | 0.0000 |
| 3 | ENSMUSG00000100580 | 4933436I20Rik | RIKEN cDNA 4933436I20 gene | 3.4594 | 0.0000 |
| 4 | ENSMUSG00000111180 | Gm39348 | predicted gene, 39348 | 3.1699 | 0.0000 |
| 5 | ENSMUSG00000103384 | Gm37753 | predicted gene, 37753 | 2.5850 | 0.0000 |
| 6 | ENSMUSG00000103707 | Pcdha6 | NA | 2.5850 | 0.0000 |
| 7 | ENSMUSG00000083425 | Gm13992 | predicted gene 13992 | 2.3219 | 0.0075 |
| 8 | ENSMUSG00000097754 | Ptgs2os2 | prostaglandin-endoperoxide synthase 2, opposite strand 2 | 2.3219 | 0.0075 |
| 9 | ENSMUSG00000097927 | Gm6999 | predicted gene 6999 | 2.3219 | 0.0075 |
| 10 | ENSMUSG00000106712 | Gm19649 | predicted gene, 19649 | 2.3219 | 0.0075 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000080757 | Gm15029 | predicted gene 15029 | -2.4534 | 0.0085 |
| 50997 | ENSMUSG00000049460 | Gm8396 | predicted gene 8396 | -2.4037 | 0.0148 |
| 50996 | ENSMUSG00000094354 | Gm21882 | NA | -2.3685 | 0.0001 |
| 50995 | ENSMUSG00000068151 | A230006K03Rik | RIKEN cDNA A230006K03 gene | -2.3589 | 0.0148 |
| 50994 | ENSMUSG00000036285 | Noa1 | Nitric oxide-associated protein 1 | -2.3587 | 0.0000 |
| 50993 | ENSMUSG00000112468 | Gm47720 | predicted gene, 47720 | -2.3219 | 0.3272 |
| 50992 | ENSMUSG00000101967 | Gm29555 | predicted gene 29555 | -2.3219 | 0.3272 |
| 50991 | ENSMUSG00000101134 | Gm28482 | predicted gene 28482 | -2.3219 | 0.3272 |
| 50990 | ENSMUSG00000101124 | Gm28371 | predicted gene 28371 | -2.3219 | 0.3272 |
| 50989 | ENSMUSG00000100694 | Gm29182 | predicted gene 29182 | -2.3219 | 0.3272 |
