Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370541

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370541


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M19Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 5.7004 0.0000
2 ENSMUSG00000109354 Olfr706 olfactory receptor 706 4.5236 0.0000
3 ENSMUSG00000100580 4933436I20Rik RIKEN cDNA 4933436I20 gene 3.4594 0.0000
4 ENSMUSG00000111180 Gm39348 predicted gene, 39348 3.1699 0.0000
5 ENSMUSG00000103384 Gm37753 predicted gene, 37753 2.5850 0.0000
6 ENSMUSG00000103707 Pcdha6 protocadherin alpha 6 2.5850 0.0000
7 ENSMUSG00000083425 Gm13992 predicted gene 13992 2.3219 0.0075
8 ENSMUSG00000097754 Ptgs2os2 prostaglandin-endoperoxide synthase 2, opposite strand 2 2.3219 0.0075
9 ENSMUSG00000097927 Gm6999 predicted gene 6999 2.3219 0.0075
10 ENSMUSG00000106712 Gm19649 predicted gene, 19649 2.3219 0.0075

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000097832 Gm26912 predicted gene, 26912 -1.0500 0.0020
47080 ENSMUSG00000081161 Gm12783 predicted gene 12783 -1.0495 0.0000
47079 ENSMUSG00000068015 Lrch1 leucine-rich repeats and calponin homology (CH) domain containing 1 -1.0495 0.0000
47078 ENSMUSG00000046408 1700067K01Rik RIKEN cDNA 1700067K01 gene -1.0494 0.0000
47077 ENSMUSG00000035397 Klf16 Kruppel-like factor 16 -1.0494 0.0000
47076 ENSMUSG00000022533 Atp13a3 ATPase type 13A3 -1.0492 0.0000
47075 ENSMUSG00000092384 Gm4189 predicted gene 4189 -1.0492 0.0000
47074 ENSMUSG00000025408 Ddit3 DNA-damage inducible transcript 3 -1.0492 0.0000
47073 ENSMUSG00000079071 Slc28a2b solute carrier family 28 member 2b -1.0490 0.0354
10 ENSMUSG00000106712 Gm19649 predicted gene, 19649 2.3219 0.0075

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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