SHOGoiN Cell Methylome: GSM1370541
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370541 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M19 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000105290 | Gm43528 | predicted gene 43528 | 5.7004 | 0.0000 |
| 2 | ENSMUSG00000109354 | Olfr706 | olfactory receptor 706 | 4.5236 | 0.0000 |
| 3 | ENSMUSG00000100580 | 4933436I20Rik | RIKEN cDNA 4933436I20 gene | 3.4594 | 0.0000 |
| 4 | ENSMUSG00000111180 | Gm39348 | predicted gene, 39348 | 3.1699 | 0.0000 |
| 5 | ENSMUSG00000103384 | Gm37753 | predicted gene, 37753 | 2.5850 | 0.0000 |
| 6 | ENSMUSG00000103707 | Pcdha6 | protocadherin alpha 6 | 2.5850 | 0.0000 |
| 7 | ENSMUSG00000083425 | Gm13992 | predicted gene 13992 | 2.3219 | 0.0075 |
| 8 | ENSMUSG00000097754 | Ptgs2os2 | prostaglandin-endoperoxide synthase 2, opposite strand 2 | 2.3219 | 0.0075 |
| 9 | ENSMUSG00000097927 | Gm6999 | predicted gene 6999 | 2.3219 | 0.0075 |
| 10 | ENSMUSG00000106712 | Gm19649 | predicted gene, 19649 | 2.3219 | 0.0075 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000106267 | Gm40319 | predicted gene, 40319 | -1.7925 | 0.3307 |
| 50853 | ENSMUSG00000103595 | Gm37355 | predicted gene, 37355 | -1.7925 | 0.3307 |
| 50852 | ENSMUSG00000098713 | Rps2-ps5 | ribosomal protein S2, pseudogene 5 | -1.7925 | 0.1894 |
| 50851 | ENSMUSG00000095632 | Vmn1r175 | vomeronasal 1 receptor 175 | -1.7925 | 0.0056 |
| 50850 | ENSMUSG00000094938 | Gm23092 | predicted gene, 23092 | -1.7925 | 0.3307 |
| 50849 | ENSMUSG00000086798 | Gm16222 | predicted gene 16222 | -1.7925 | 0.3307 |
| 50848 | ENSMUSG00000086078 | Gm11657 | predicted gene 11657 | -1.7925 | 0.3307 |
| 50847 | ENSMUSG00000084324 | Gm6500 | predicted gene 6500 | -1.7925 | 0.1894 |
| 50846 | ENSMUSG00000082435 | Gm13813 | predicted gene 13813 | -1.7925 | 0.3307 |
| 50845 | ENSMUSG00000082403 | Gm14916 | predicted gene 14916 | -1.7925 | 0.1894 |
