Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1370541
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370541
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M19
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000105290
Gm43528
predicted gene 43528
5.7004
0.0000
2
ENSMUSG00000109354
Olfr706
olfactory receptor 706
4.5236
0.0000
3
ENSMUSG00000100580
4933436I20Rik
RIKEN cDNA 4933436I20 gene
3.4594
0.0000
4
ENSMUSG00000111180
Gm39348
predicted gene, 39348
3.1699
0.0000
5
ENSMUSG00000103384
Gm37753
predicted gene, 37753
2.5850
0.0000
6
ENSMUSG00000103707
Pcdha6
protocadherin alpha 6
2.5850
0.0000
7
ENSMUSG00000083425
Gm13992
predicted gene 13992
2.3219
0.0075
8
ENSMUSG00000097754
Ptgs2os2
prostaglandin-endoperoxide synthase 2, opposite strand 2
2.3219
0.0075
9
ENSMUSG00000097927
Gm6999
predicted gene 6999
2.3219
0.0075
10
ENSMUSG00000106712
Gm19649
predicted gene, 19649
2.3219
0.0075
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000097832
Gm26912
predicted gene, 26912
-1.0500
0.0020
47080
ENSMUSG00000081161
Gm12783
predicted gene 12783
-1.0495
0.0000
47079
ENSMUSG00000068015
Lrch1
leucine-rich repeats and calponin homology (CH) domain containing 1
-1.0495
0.0000
47078
ENSMUSG00000046408
1700067K01Rik
RIKEN cDNA 1700067K01 gene
-1.0494
0.0000
47077
ENSMUSG00000035397
Klf16
Kruppel-like factor 16
-1.0494
0.0000
47076
ENSMUSG00000022533
Atp13a3
ATPase type 13A3
-1.0492
0.0000
47075
ENSMUSG00000092384
Gm4189
predicted gene 4189
-1.0492
0.0000
47074
ENSMUSG00000025408
Ddit3
DNA-damage inducible transcript 3
-1.0492
0.0000
47073
ENSMUSG00000079071
Slc28a2b
solute carrier family 28 member 2b
-1.0490
0.0354
10
ENSMUSG00000106712
Gm19649
predicted gene, 19649
2.3219
0.0075
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...