Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370541

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1370541 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP041257	SRP041257_M19	Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000105290	Gm43528	predicted gene 43528	5.7004	0.0000
2	ENSMUSG00000109354	Olfr706	olfactory receptor 706	4.5236	0.0000
3	ENSMUSG00000100580	4933436I20Rik	RIKEN cDNA 4933436I20 gene	3.4594	0.0000
4	ENSMUSG00000111180	Gm39348	predicted gene, 39348	3.1699	0.0000
5	ENSMUSG00000103384	Gm37753	predicted gene, 37753	2.5850	0.0000
6	ENSMUSG00000103707	Pcdha6	protocadherin alpha 6	2.5850	0.0000
7	ENSMUSG00000083425	Gm13992	predicted gene 13992	2.3219	0.0075
8	ENSMUSG00000097754	Ptgs2os2	prostaglandin-endoperoxide synthase 2, opposite strand 2	2.3219	0.0075
9	ENSMUSG00000097927	Gm6999	predicted gene 6999	2.3219	0.0075
10	ENSMUSG00000106712	Gm19649	predicted gene, 19649	2.3219	0.0075

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000097832	Gm26912	predicted gene, 26912	-1.0500	0.0020
47080	ENSMUSG00000081161	Gm12783	predicted gene 12783	-1.0495	0.0000
47079	ENSMUSG00000068015	Lrch1	leucine-rich repeats and calponin homology (CH) domain containing 1	-1.0495	0.0000
47078	ENSMUSG00000046408	1700067K01Rik	RIKEN cDNA 1700067K01 gene	-1.0494	0.0000
47077	ENSMUSG00000035397	Klf16	Kruppel-like factor 16	-1.0494	0.0000
47076	ENSMUSG00000022533	Atp13a3	ATPase type 13A3	-1.0492	0.0000
47075	ENSMUSG00000092384	Gm4189	predicted gene 4189	-1.0492	0.0000
47074	ENSMUSG00000025408	Ddit3	DNA-damage inducible transcript 3	-1.0492	0.0000
47073	ENSMUSG00000079071	Slc28a2b	solute carrier family 28 member 2b	-1.0490	0.0354
10	ENSMUSG00000106712	Gm19649	predicted gene, 19649	2.3219	0.0075

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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