Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370542

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370542


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M20Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000028792 Ak2 adenylate kinase 2 6.4919 0.0000
2 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 5.0444 0.0000
3 ENSMUSG00000100580 4933436I20Rik RIKEN cDNA 4933436I20 gene 4.5236 0.0000
4 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.8074 0.0000
5 ENSMUSG00000085582 3110099E03Rik RIKEN cDNA 3110099E03 gene 2.5850 0.0001
6 ENSMUSG00000025868 Higd2a HIG1 domain family, member 2A 2.3219 0.0004
7 ENSMUSG00000025869 Nop16 NOP16 nucleolar protein 2.3219 0.0004
8 ENSMUSG00000091605 Gm8256 predicted gene 8256 2.3219 0.0000
9 ENSMUSG00000069390 Olfr707 olfactory receptor 707 2.2618 0.0000
10 ENSMUSG00000106010 Gm42616 predicted gene 42616 2.0437 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000037003 Tns2 tensin 2 -1.2289 0.1002
47080 ENSMUSG00000055003 Lrtm2 leucine-rich repeats and transmembrane domains 2 -1.2289 0.0175
47079 ENSMUSG00000085500 Gm16976 predicted gene, 16976 -1.2289 0.1654
47078 ENSMUSG00000084703 Gm22985 predicted gene, 22985 -1.2287 0.0003
47077 ENSMUSG00000091366 Gm17040 predicted gene 17040 -1.2284 0.0000
47076 ENSMUSG00000026917 Wdr5 WD repeat domain 5 -1.2284 0.0000
47075 ENSMUSG00000112397 Gm10824 predicted gene 10824 -1.2283 0.0030
47074 ENSMUSG00000034341 Wbp2 WW domain binding protein 2 -1.2283 0.0003
47073 ENSMUSG00000039354 Smarcal1 SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 -1.2282 0.0785
47072 ENSMUSG00000034903 Cobll1 Cobl-like 1 -1.2281 0.0379

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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