SHOGoiN Cell Methylome: GSM1370542

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370542


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M20Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000028792 Ak2 adenylate kinase 2 6.4919 0.0000
2 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 5.0444 0.0000
3 ENSMUSG00000100580 4933436I20Rik RIKEN cDNA 4933436I20 gene 4.5236 0.0000
4 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.8074 0.0000
5 ENSMUSG00000085582 3110099E03Rik RIKEN cDNA 3110099E03 gene 2.5850 0.0001
6 ENSMUSG00000025868 Higd2a HIG1 domain family, member 2A 2.3219 0.0004
7 ENSMUSG00000025869 Nop16 NOP16 nucleolar protein 2.3219 0.0004
8 ENSMUSG00000091605 Gm8256 predicted gene 8256 2.3219 0.0000
9 ENSMUSG00000069390 Olfr707 olfactory receptor 707 2.2618 0.0000
10 ENSMUSG00000106010 Gm42616 predicted gene 42616 2.0437 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000025930 Msc musculin -1.9383 0.0000
50853 ENSMUSG00000097534 Gm16675 predicted gene, 16675 -1.9361 0.0011
50852 ENSMUSG00000094354 Gm21882 predicted gene, 21882 -1.9345 0.0005
50851 ENSMUSG00000102282 A930032L01Rik RIKEN cDNA A930032L01 gene -1.9342 0.0000
50850 ENSMUSG00000065968 Ifitm7 interferon induced transmembrane protein 7 -1.9329 0.0110
50849 ENSMUSG00000089299 Gm24637 predicted gene, 24637 -1.9308 0.1541
50848 ENSMUSG00000065016 Snora3 small nucleolar RNA, H/ACA box 3 -1.9308 0.1541
50847 ENSMUSG00000002957 Ap2a2 adaptor-related protein complex 2, alpha 2 subunit -1.9243 0.0000
50846 ENSMUSG00000096449 Gm4076 predicted gene 4076 -1.9164 0.0001
50845 ENSMUSG00000100120 Gm553 predicted gene 553 -1.9037 0.6037

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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