SHOGoiN Cell Methylome: GSM1370543

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370543


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M21Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109539 Gm44667 predicted gene 44667 3.7004 0.0000
2 ENSMUSG00000104318 Pcdha7 protocadherin alpha 7 3.4594 0.0000
3 ENSMUSG00000101818 Gm28269 predicted gene 28269 3.1699 0.0000
4 ENSMUSG00000098114 Gm26957 predicted gene, 26957 3.0000 0.0000
5 ENSMUSG00000071753 C230004F18Rik RIKEN cDNA C230004F18 gene 2.3219 0.0027
6 ENSMUSG00000108512 Gm7238 predicted gene 7238 2.3219 0.0027
7 ENSMUSG00000015405 Ace2 angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 2.0000 0.0119
8 ENSMUSG00000047728 Ly6g2 lymphocyte antigen 6 complex, locus G2 2.0000 0.0119
9 ENSMUSG00000054640 Slc8a1 solute carrier family 8 (sodium/calcium exchanger), member 1 2.0000 0.0119
10 ENSMUSG00000081577 Gm13455 predicted gene 13455 2.0000 0.0119

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000031792 Usb1 U6 snRNA biogenesis 1 -1.6865 0.0000
50853 ENSMUSG00000002043 Trappc6a trafficking protein particle complex 6A -1.6846 0.0000
50852 ENSMUSG00000046145 1700018M17Rik RIKEN cDNA 1700018M17 gene -1.6826 0.0000
50851 ENSMUSG00000080886 Gm14847 predicted gene 14847 -1.6815 0.2139
50850 ENSMUSG00000025324 Atp10a ATPase, class V, type 10A -1.6793 0.0028
50849 ENSMUSG00000067299 Crygd crystallin, gamma D -1.6781 0.0002
50848 ENSMUSG00000020869 Lrrc59 leucine rich repeat containing 59 -1.6714 0.0000
50847 ENSMUSG00000026766 Mmadhc methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria -1.6703 0.0000
50846 ENSMUSG00000112711 Gm32552 predicted gene, 32552 -1.6667 0.3629
50845 ENSMUSG00000109439 Gm44853 predicted gene 44853 -1.6667 0.2246

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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