Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370543

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370543


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M21Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109539 Gm44667 predicted gene 44667 3.7004 0.0000
2 ENSMUSG00000104318 Pcdha7 protocadherin alpha 7 3.4594 0.0000
3 ENSMUSG00000101818 Gm28269 predicted gene 28269 3.1699 0.0000
4 ENSMUSG00000098114 Gm26957 predicted gene, 26957 3.0000 0.0000
5 ENSMUSG00000071753 Cdr1os cerebellar degeneration related antigen 1, opposite strand 2.3219 0.0027
6 ENSMUSG00000108512 Gm7238 predicted gene 7238 2.3219 0.0027
7 ENSMUSG00000015405 Ace2 angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 2.0000 0.0119
8 ENSMUSG00000047728 Ly6g2 lymphocyte antigen 6 complex, locus G2 2.0000 0.0119
9 ENSMUSG00000054640 Slc8a1 solute carrier family 8 (sodium/calcium exchanger), member 1 2.0000 0.0119
10 ENSMUSG00000081577 Gm13455 predicted gene 13455 2.0000 0.0119

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000060950 Trmt61a tRNA methyltransferase 61A -1.1277 0.0000
47080 ENSMUSG00000107245 Gm42803 predicted gene 42803 -1.1276 0.0074
47079 ENSMUSG00000097870 Gm26868 predicted gene, 26868 -1.1276 0.0075
47078 ENSMUSG00000089683 4930570N18Rik RIKEN cDNA 4930570N18 gene -1.1276 0.0304
47077 ENSMUSG00000062949 Atp11c ATPase, class VI, type 11C -1.1276 0.0075
47076 ENSMUSG00000008373 Prpf31 pre-mRNA processing factor 31 -1.1276 0.0075
47075 ENSMUSG00000037773 Pced1a PC-esterase domain containing 1A -1.1275 0.0000
47074 ENSMUSG00000019039 Dalrd3 DALR anticodon binding domain containing 3 -1.1274 0.0000
47073 ENSMUSG00000111122 Gm5949 predicted gene 5949 -1.1272 0.0011
47072 ENSMUSG00000033906 Zdhhc15 zinc finger, DHHC domain containing 15 -1.1272 0.0011

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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