SHOGoiN Cell Methylome: GSM1370544

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370544


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M22Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000053678 Defb40 defensin beta 40 5.0444 0.0000
2 ENSMUSG00000072964 Bhlhb9 basic helix-loop-helix domain containing, class B9 4.2479 0.0000
3 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.0444 0.0000
4 ENSMUSG00000110158 Gm45690 predicted gene 45690 3.3219 0.0000
5 ENSMUSG00000096535 Gm24755 predicted gene, 24755 3.0000 0.0000
6 ENSMUSG00000098114 Gm26957 predicted gene, 26957 2.8074 0.0001
7 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.5850 0.0003
8 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.4726 0.0000
9 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.4726 0.0000
10 ENSMUSG00000031105 Slc25a14 solute carrier family 25 (mitochondrial carrier, brain), member 14 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000083563 Gm13340 predicted gene 13340 -1.8597 0.0000
50853 ENSMUSG00000102833 Gm9694 predicted gene 9694 -1.8536 0.0000
50852 ENSMUSG00000100113 Gm28592 predicted gene 28592 -1.8533 0.0000
50851 ENSMUSG00000020205 Phlda1 pleckstrin homology like domain, family A, member 1 -1.8533 0.0000
50850 ENSMUSG00000021681 Aggf1 angiogenic factor with G patch and FHA domains 1 -1.8507 0.0000
50849 ENSMUSG00000079006 Gm14151 predicted gene 14151 -1.8427 0.1826
50848 ENSMUSG00000037415 Ranbp10 RAN binding protein 10 -1.8371 0.0001
50847 ENSMUSG00000077085 Gm23697 predicted gene, 23697 -1.8350 0.1358
50846 ENSMUSG00000042244 Pglyrp3 peptidoglycan recognition protein 3 -1.8350 0.1358
50845 ENSMUSG00000075127 Olfr1179 olfactory receptor 1179 -1.8340 0.0845

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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