Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370544

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370544


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M22Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000053678 Defb40 defensin beta 40 5.0444 0.0000
2 ENSMUSG00000072964 Bhlhb9 basic helix-loop-helix domain containing, class B9 4.2479 0.0000
3 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.0444 0.0000
4 ENSMUSG00000110158 Gm45690 predicted gene 45690 3.3219 0.0000
6 ENSMUSG00000098114 Gm26957 predicted gene, 26957 2.8074 0.0001
7 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.5850 0.0003
8 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.4726 0.0000
9 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.4726 0.0000
10 ENSMUSG00000031105 Slc25a14 solute carrier family 25 (mitochondrial carrier, brain), member 14 2.3219 0.0000
47072 ENSMUSG00000089744 Gm16146 predicted gene 16146 -1.1462 0.2297

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000092514 Vmn1r-ps86 vomeronasal 1 receptor, pseudogene 86 -1.1462 0.2297
47080 ENSMUSG00000092463 Gm20489 predicted gene 20489 -1.1462 0.5905
47079 ENSMUSG00000092248 Vmn1r-ps63 vomeronasal 1 receptor, pseudogene 63 -1.1462 0.5905
47078 ENSMUSG00000091808 Gm9671 predicted gene 9671 -1.1462 0.5905
47077 ENSMUSG00000091233 Gm6434 predicted gene 6434 -1.1462 0.5905
47076 ENSMUSG00000091022 Gm3115 predicted gene 3115 -1.1462 0.5905
47075 ENSMUSG00000090700 Cyp4f40 cytochrome P450, family 4, subfamily f, polypeptide 40 -1.1462 0.2297
47074 ENSMUSG00000089990 Gm15852 predicted gene 15852 -1.1462 0.2297
47073 ENSMUSG00000089914 4930486I03Rik RIKEN cDNA 4930486I03 gene -1.1462 0.5905
47072 ENSMUSG00000089744 Gm16146 predicted gene 16146 -1.1462 0.2297

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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