Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1370545
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370545
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M23
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000105218
Gm38413
predicted gene, 38413
3.1699
0.0000
2
ENSMUSG00000031355
Arhgap6
Rho GTPase activating protein 6
3.0000
0.0000
3
ENSMUSG00000069390
Olfr707
olfactory receptor 707
2.8074
0.0000
4
ENSMUSG00000081531
Vmn1r-ps113
vomeronasal 1 receptor, pseudogene 113
2.8074
0.0000
5
ENSMUSG00000082540
Vmn1r-ps112
vomeronasal 1 receptor, pseudogene 112
2.8074
0.0000
6
ENSMUSG00000110158
Gm45690
predicted gene 45690
2.8074
0.0000
7
ENSMUSG00000025758
Plk4
polo like kinase 4
2.5850
0.0003
9
ENSMUSG00000107681
4930528H21Rik
RIKEN cDNA 4930528H21 gene
2.5850
0.0003
10
ENSMUSG00000091881
Gm17146
predicted gene 17146
2.5646
0.0000
47072
ENSMUSG00000001666
Ddt
D-dopachrome tautomerase
-1.2973
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000049897
Stkld1
serine/threonine kinase-like domain containing 1
-1.2983
0.0000
47080
ENSMUSG00000014867
Surf4
surfeit gene 4
-1.2983
0.0000
47079
ENSMUSG00000033427
Upb1
ureidopropionase, beta
-1.2981
0.0003
47078
ENSMUSG00000097330
Gm26672
predicted gene, 26672
-1.2980
0.0000
47077
ENSMUSG00000082362
Gm5187
predicted gene 5187
-1.2979
0.0138
47076
ENSMUSG00000040822
1700123O20Rik
RIKEN cDNA 1700123O20 gene
-1.2977
0.1059
47075
ENSMUSG00000028072
Ntrk1
neurotrophic tyrosine kinase, receptor, type 1
-1.2975
0.0019
47074
ENSMUSG00000106446
Gm42970
predicted gene 42970
-1.2974
0.2061
47073
ENSMUSG00000058881
Zfp516
zinc finger protein 516
-1.2973
0.0000
47072
ENSMUSG00000001666
Ddt
D-dopachrome tautomerase
-1.2973
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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