Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370545

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370545


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M23Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105218 Gm38413 predicted gene, 38413 3.1699 0.0000
2 ENSMUSG00000031355 Arhgap6 Rho GTPase activating protein 6 3.0000 0.0000
3 ENSMUSG00000069390 Olfr707 olfactory receptor 707 2.8074 0.0000
4 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.8074 0.0000
5 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.8074 0.0000
6 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.8074 0.0000
7 ENSMUSG00000025758 Plk4 polo like kinase 4 2.5850 0.0003
9 ENSMUSG00000107681 4930528H21Rik RIKEN cDNA 4930528H21 gene 2.5850 0.0003
10 ENSMUSG00000091881 Gm17146 predicted gene 17146 2.5646 0.0000
47072 ENSMUSG00000001666 Ddt D-dopachrome tautomerase -1.2973 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000049897 Stkld1 serine/threonine kinase-like domain containing 1 -1.2983 0.0000
47080 ENSMUSG00000014867 Surf4 surfeit gene 4 -1.2983 0.0000
47079 ENSMUSG00000033427 Upb1 ureidopropionase, beta -1.2981 0.0003
47078 ENSMUSG00000097330 Gm26672 predicted gene, 26672 -1.2980 0.0000
47077 ENSMUSG00000082362 Gm5187 predicted gene 5187 -1.2979 0.0138
47076 ENSMUSG00000040822 1700123O20Rik RIKEN cDNA 1700123O20 gene -1.2977 0.1059
47075 ENSMUSG00000028072 Ntrk1 neurotrophic tyrosine kinase, receptor, type 1 -1.2975 0.0019
47074 ENSMUSG00000106446 Gm42970 predicted gene 42970 -1.2974 0.2061
47073 ENSMUSG00000058881 Zfp516 zinc finger protein 516 -1.2973 0.0000
47072 ENSMUSG00000001666 Ddt D-dopachrome tautomerase -1.2973 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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