Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370545

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1370545 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP041257	SRP041257_M23	Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000105218	Gm38413	predicted gene, 38413	3.1699	0.0000
2	ENSMUSG00000031355	Arhgap6	Rho GTPase activating protein 6	3.0000	0.0000
3	ENSMUSG00000069390	Olfr707	olfactory receptor 707	2.8074	0.0000
4	ENSMUSG00000081531	Vmn1r-ps113	vomeronasal 1 receptor, pseudogene 113	2.8074	0.0000
5	ENSMUSG00000082540	Vmn1r-ps112	vomeronasal 1 receptor, pseudogene 112	2.8074	0.0000
6	ENSMUSG00000110158	Gm45690	predicted gene 45690	2.8074	0.0000
7	ENSMUSG00000025758	Plk4	polo like kinase 4	2.5850	0.0003
9	ENSMUSG00000107681	4930528H21Rik	RIKEN cDNA 4930528H21 gene	2.5850	0.0003
10	ENSMUSG00000091881	Gm17146	predicted gene 17146	2.5646	0.0000
47072	ENSMUSG00000001666	Ddt	D-dopachrome tautomerase	-1.2973	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000049897	Stkld1	serine/threonine kinase-like domain containing 1	-1.2983	0.0000
47080	ENSMUSG00000014867	Surf4	surfeit gene 4	-1.2983	0.0000
47079	ENSMUSG00000033427	Upb1	ureidopropionase, beta	-1.2981	0.0003
47078	ENSMUSG00000097330	Gm26672	predicted gene, 26672	-1.2980	0.0000
47077	ENSMUSG00000082362	Gm5187	predicted gene 5187	-1.2979	0.0138
47076	ENSMUSG00000040822	1700123O20Rik	RIKEN cDNA 1700123O20 gene	-1.2977	0.1059
47075	ENSMUSG00000028072	Ntrk1	neurotrophic tyrosine kinase, receptor, type 1	-1.2975	0.0019
47074	ENSMUSG00000106446	Gm42970	predicted gene 42970	-1.2974	0.2061
47073	ENSMUSG00000058881	Zfp516	zinc finger protein 516	-1.2973	0.0000
47072	ENSMUSG00000001666	Ddt	D-dopachrome tautomerase	-1.2973	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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