SHOGoiN Cell Methylome: GSM1370545
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370545 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M23 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000105218 | Gm38413 | predicted gene, 38413 | 3.1699 | 0.0000 |
| 2 | ENSMUSG00000031355 | Arhgap6 | Rho GTPase activating protein 6 | 3.0000 | 0.0000 |
| 3 | ENSMUSG00000069390 | Olfr707 | olfactory receptor 707 | 2.8074 | 0.0000 |
| 4 | ENSMUSG00000081531 | Vmn1r-ps113 | vomeronasal 1 receptor, pseudogene 113 | 2.8074 | 0.0000 |
| 5 | ENSMUSG00000082540 | Vmn1r-ps112 | vomeronasal 1 receptor, pseudogene 112 | 2.8074 | 0.0000 |
| 6 | ENSMUSG00000110158 | Gm45690 | predicted gene 45690 | 2.8074 | 0.0000 |
| 7 | ENSMUSG00000025758 | Plk4 | polo like kinase 4 | 2.5850 | 0.0003 |
| 8 | ENSMUSG00000065068 | n-R5s5 | nuclear encoded rRNA 5S 5 | 2.5850 | 0.0003 |
| 9 | ENSMUSG00000107681 | 4930528H21Rik | RIKEN cDNA 4930528H21 gene | 2.5850 | 0.0003 |
| 10 | ENSMUSG00000091881 | Gm17146 | predicted gene 17146 | 2.5646 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000088703 | Gm25555 | predicted gene, 25555 | -2.3764 | 0.0009 |
| 50853 | ENSMUSG00000101334 | 1700028M03Rik | RIKEN cDNA 1700028M03 gene | -2.3685 | 0.0969 |
| 50852 | ENSMUSG00000100680 | 1810044D09Rik | RIKEN cDNA 1810044D09 gene | -2.3502 | 0.0467 |
| 50851 | ENSMUSG00000097693 | 4930471M09Rik | RIKEN cDNA 4930471M09 gene | -2.3502 | 0.0467 |
| 50850 | ENSMUSG00000097520 | 4930488L21Rik | RIKEN cDNA 4930488L21 gene | -2.3502 | 0.1479 |
| 50849 | ENSMUSG00000094603 | Gm25872 | predicted gene, 25872 | -2.3481 | 0.4604 |
| 50848 | ENSMUSG00000083563 | Gm13340 | predicted gene 13340 | -2.3440 | 0.0000 |
| 50847 | ENSMUSG00000103161 | Gm38148 | predicted gene, 38148 | -2.3371 | 0.0011 |
| 50846 | ENSMUSG00000083574 | Gm15709 | predicted gene 15709 | -2.3282 | 0.0000 |
| 50845 | ENSMUSG00000110120 | Gm45251 | predicted gene 45251 | -2.3219 | 0.3671 |
