Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370546

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370546


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M24Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 2.8122 0.0000
2 ENSMUSG00000109539 Gm44667 predicted gene 44667 2.8074 0.0008
3 ENSMUSG00000040132 Svs2 seminal vesicle secretory protein 2 2.3219 0.0089
4 ENSMUSG00000075137 Olfr1163 olfactory receptor 1163 2.3219 0.0089
6 ENSMUSG00000083094 Gm4908 predicted gene 4908 2.3219 0.0089
7 ENSMUSG00000083166 Gm8648 predicted gene 8648 2.3219 0.0089
8 ENSMUSG00000084479 Gm26424 predicted gene, 26424 2.3219 0.0089
9 ENSMUSG00000085757 Tslrn1 testis specific long noncoding RNA 1 2.3219 0.0001
10 ENSMUSG00000087815 Gm22491 predicted gene, 22491 2.3219 0.0089
47072 ENSMUSG00000025986 Slc39a10 solute carrier family 39 (zinc transporter), member 10 -1.0339 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000023018 Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 -1.0342 0.0002
47080 ENSMUSG00000110830 Gm46218 predicted gene, 46218 -1.0340 0.0674
47079 ENSMUSG00000109493 Gm45208 predicted gene 45208 -1.0340 0.0937
47078 ENSMUSG00000102745 Gm37600 predicted gene, 37600 -1.0340 0.0785
47077 ENSMUSG00000098785 Mir6395 microRNA 6395 -1.0340 0.0064
47076 ENSMUSG00000081242 Gm15719 predicted gene 15719 -1.0340 0.0785
47075 ENSMUSG00000049436 Upk1b uroplakin 1B -1.0340 0.2913
47074 ENSMUSG00000039382 Wdr45 WD repeat domain 45 -1.0340 0.0937
47073 ENSMUSG00000037660 Gdf7 growth differentiation factor 7 -1.0340 0.0001
47072 ENSMUSG00000025986 Slc39a10 solute carrier family 39 (zinc transporter), member 10 -1.0339 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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