SHOGoiN Cell Methylome: GSM1370555
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370555 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M25 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000069390 | Olfr707 | olfactory receptor 707 | 5.0000 | 0.0000 |
| 2 | ENSMUSG00000112452 | Gm48075 | predicted gene, 48075 | 3.4594 | 0.0034 |
| 3 | ENSMUSG00000103465 | Gm37617 | predicted gene, 37617 | 3.0000 | 0.0209 |
| 4 | ENSMUSG00000109354 | Olfr706 | olfactory receptor 706 | 3.0000 | 0.0000 |
| 5 | ENSMUSG00000083238 | Hspe1-ps4 | heat shock protein 1 (chaperonin 10), pseudogene 4 | 2.8555 | 0.0000 |
| 6 | ENSMUSG00000036938 | Try5 | trypsin 5 | 2.8074 | 0.0387 |
| 7 | ENSMUSG00000082886 | Gm5386 | predicted pseudogene 5386 | 2.8074 | 0.0387 |
| 8 | ENSMUSG00000101242 | Gm28319 | predicted gene 28319 | 2.8074 | 0.0387 |
| 9 | ENSMUSG00000105290 | Gm43528 | predicted gene 43528 | 2.6326 | 0.0000 |
| 10 | ENSMUSG00000044454 | Olfr867 | olfactory receptor 867 | 2.5850 | 0.0724 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000046196 | Ttc39d | tetratricopeptide repeat domain 39D | -1.7874 | 0.0000 |
| 50853 | ENSMUSG00000022052 | Ppp2r2a | protein phosphatase 2, regulatory subunit B, alpha | -1.7821 | 0.0000 |
| 50852 | ENSMUSG00000103009 | Gm4430 | predicted gene 4430 | -1.7760 | 0.0000 |
| 50851 | ENSMUSG00000027108 | Ola1 | Obg-like ATPase 1 | -1.7745 | 0.0000 |
| 50850 | ENSMUSG00000105522 | Gm15235 | predicted gene 15235 | -1.7722 | 0.0000 |
| 50849 | ENSMUSG00000082226 | Gm715 | predicted gene 715 | -1.7717 | 0.0000 |
| 50848 | ENSMUSG00000098944 | Mir8120 | microRNA 8120 | -1.7717 | 0.0000 |
| 50847 | ENSMUSG00000086774 | Gm11915 | predicted gene 11915 | -1.7673 | 0.0000 |
| 50846 | ENSMUSG00000020698 | Cct6b | chaperonin containing Tcp1, subunit 6b (zeta) | -1.7673 | 0.0000 |
| 50845 | ENSMUSG00000039242 | B3galnt2 | UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2 | -1.7628 | 0.0000 |
