Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM1370555
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370555
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M25
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000069390
Olfr707
olfactory receptor 707
5.0000
0.0000
2
ENSMUSG00000112452
Gm48075
predicted gene, 48075
3.4594
0.0034
3
ENSMUSG00000103465
Gm37617
predicted gene, 37617
3.0000
0.0209
4
ENSMUSG00000109354
Olfr706
olfactory receptor 706
3.0000
0.0000
5
ENSMUSG00000083238
Hspe1-ps4
heat shock protein 1 (chaperonin 10), pseudogene 4
2.8555
0.0000
6
ENSMUSG00000036938
Try5
trypsin 5
2.8074
0.0387
7
ENSMUSG00000082886
Gm5386
predicted pseudogene 5386
2.8074
0.0387
8
ENSMUSG00000101242
Gm28319
predicted gene 28319
2.8074
0.0387
9
ENSMUSG00000105290
Gm43528
predicted gene 43528
2.6326
0.0000
10
ENSMUSG00000044454
Olfr867
olfactory receptor 867
2.5850
0.0724
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000051817
Sox12
SRY (sex determining region Y)-box 12
-0.7333
0.0000
47079
ENSMUSG00000074580
4931440P22Rik
RIKEN cDNA 4931440P22 gene
-0.7332
0.0000
47078
ENSMUSG00000100005
B130024G19Rik
RIKEN cDNA B130024G19 gene
-0.7331
0.0000
47077
ENSMUSG00000107353
4930430O22Rik
RIKEN cDNA 4930430O22 gene
-0.7330
0.0000
47076
ENSMUSG00000082171
Rpl27-ps2
ribosomal protein L27, pseudogene 2
-0.7329
0.0000
47075
ENSMUSG00000107882
Gm44278
predicted gene, 44278
-0.7324
0.0000
47074
ENSMUSG00000100779
Gm29292
predicted gene 29292
-0.7323
0.0000
47073
ENSMUSG00000060152
Pop5
processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
-0.7323
0.0000
47072
ENSMUSG00000053153
Spag16
sperm associated antigen 16
-0.7322
0.0000
10
ENSMUSG00000044454
Olfr867
olfactory receptor 867
2.5850
0.0724
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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