Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1370556
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370556
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M26
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000105290
Gm43528
predicted gene 43528
5.0444
0.0000
2
ENSMUSG00000100580
4933436I20Rik
RIKEN cDNA 4933436I20 gene
3.9069
0.0000
3
ENSMUSG00000026285
Pdcd1
programmed cell death 1
3.7657
0.0000
4
ENSMUSG00000109539
Gm44667
predicted gene 44667
3.3219
0.0014
5
ENSMUSG00000022962
Gart
phosphoribosylglycinamide formyltransferase
2.7459
0.0000
6
ENSMUSG00000078784
Rbis
ribosomal biogenesis factor
2.5850
0.0258
7
ENSMUSG00000081531
Vmn1r-ps113
vomeronasal 1 receptor, pseudogene 113
2.5850
0.0258
8
ENSMUSG00000082540
Vmn1r-ps112
vomeronasal 1 receptor, pseudogene 112
2.5850
0.0258
9
ENSMUSG00000101242
Gm28319
predicted gene 28319
2.5850
0.0258
10
ENSMUSG00000102569
Gm37041
predicted gene, 37041
2.5850
0.0007
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000106251
Gm42658
predicted gene 42658
-0.9048
0.0000
47080
ENSMUSG00000060639
H4c9
H4 clustered histone 9
-0.9048
0.0000
47079
ENSMUSG00000055761
Nkain3
Na+/K+ transporting ATPase interacting 3
-0.9048
0.0000
47078
ENSMUSG00000028975
Pex14
peroxisomal biogenesis factor 14
-0.9047
0.0001
47076
ENSMUSG00000028932
Psmc2
proteasome (prosome, macropain) 26S subunit, ATPase 2
-0.9046
0.0000
47075
ENSMUSG00000002393
Nr2f6
nuclear receptor subfamily 2, group F, member 6
-0.9044
0.0000
47074
ENSMUSG00000022019
Tdrd3
tudor domain containing 3
-0.9043
0.0000
47073
ENSMUSG00000024524
Gnal
guanine nucleotide binding protein, alpha stimulating, olfactory type
-0.9042
0.0000
47072
ENSMUSG00000020527
Myo19
myosin XIX
-0.9041
0.0000
10
ENSMUSG00000102569
Gm37041
predicted gene, 37041
2.5850
0.0007
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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