Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370556

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370556


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M26Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 5.0444 0.0000
2 ENSMUSG00000100580 4933436I20Rik RIKEN cDNA 4933436I20 gene 3.9069 0.0000
3 ENSMUSG00000026285 Pdcd1 programmed cell death 1 3.7657 0.0000
4 ENSMUSG00000109539 Gm44667 predicted gene 44667 3.3219 0.0014
5 ENSMUSG00000022962 Gart phosphoribosylglycinamide formyltransferase 2.7459 0.0000
6 ENSMUSG00000078784 Rbis ribosomal biogenesis factor 2.5850 0.0258
7 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.5850 0.0258
8 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.5850 0.0258
9 ENSMUSG00000101242 Gm28319 predicted gene 28319 2.5850 0.0258
10 ENSMUSG00000102569 Gm37041 predicted gene, 37041 2.5850 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000106251 Gm42658 predicted gene 42658 -0.9048 0.0000
47080 ENSMUSG00000060639 H4c9 H4 clustered histone 9 -0.9048 0.0000
47079 ENSMUSG00000055761 Nkain3 Na+/K+ transporting ATPase interacting 3 -0.9048 0.0000
47078 ENSMUSG00000028975 Pex14 peroxisomal biogenesis factor 14 -0.9047 0.0001
47076 ENSMUSG00000028932 Psmc2 proteasome (prosome, macropain) 26S subunit, ATPase 2 -0.9046 0.0000
47075 ENSMUSG00000002393 Nr2f6 nuclear receptor subfamily 2, group F, member 6 -0.9044 0.0000
47074 ENSMUSG00000022019 Tdrd3 tudor domain containing 3 -0.9043 0.0000
47073 ENSMUSG00000024524 Gnal guanine nucleotide binding protein, alpha stimulating, olfactory type -0.9042 0.0000
47072 ENSMUSG00000020527 Myo19 myosin XIX -0.9041 0.0000
10 ENSMUSG00000102569 Gm37041 predicted gene, 37041 2.5850 0.0007

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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