Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370556

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1370556 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP041257	SRP041257_M26	Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000105290	Gm43528	predicted gene 43528	5.0444	0.0000
2	ENSMUSG00000100580	4933436I20Rik	RIKEN cDNA 4933436I20 gene	3.9069	0.0000
3	ENSMUSG00000026285	Pdcd1	programmed cell death 1	3.7657	0.0000
4	ENSMUSG00000109539	Gm44667	predicted gene 44667	3.3219	0.0014
5	ENSMUSG00000022962	Gart	phosphoribosylglycinamide formyltransferase	2.7459	0.0000
6	ENSMUSG00000078784	Rbis	ribosomal biogenesis factor	2.5850	0.0258
7	ENSMUSG00000081531	Vmn1r-ps113	vomeronasal 1 receptor, pseudogene 113	2.5850	0.0258
8	ENSMUSG00000082540	Vmn1r-ps112	vomeronasal 1 receptor, pseudogene 112	2.5850	0.0258
9	ENSMUSG00000101242	Gm28319	predicted gene 28319	2.5850	0.0258
10	ENSMUSG00000102569	Gm37041	predicted gene, 37041	2.5850	0.0007

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000106251	Gm42658	predicted gene 42658	-0.9048	0.0000
47080	ENSMUSG00000060639	H4c9	H4 clustered histone 9	-0.9048	0.0000
47079	ENSMUSG00000055761	Nkain3	Na+/K+ transporting ATPase interacting 3	-0.9048	0.0000
47078	ENSMUSG00000028975	Pex14	peroxisomal biogenesis factor 14	-0.9047	0.0001
47076	ENSMUSG00000028932	Psmc2	proteasome (prosome, macropain) 26S subunit, ATPase 2	-0.9046	0.0000
47075	ENSMUSG00000002393	Nr2f6	nuclear receptor subfamily 2, group F, member 6	-0.9044	0.0000
47074	ENSMUSG00000022019	Tdrd3	tudor domain containing 3	-0.9043	0.0000
47073	ENSMUSG00000024524	Gnal	guanine nucleotide binding protein, alpha stimulating, olfactory type	-0.9042	0.0000
47072	ENSMUSG00000020527	Myo19	myosin XIX	-0.9041	0.0000
10	ENSMUSG00000102569	Gm37041	predicted gene, 37041	2.5850	0.0007

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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