SHOGoiN Cell Methylome: GSM1370556

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370556


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M26Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 5.0444 0.0000
2 ENSMUSG00000100580 4933436I20Rik RIKEN cDNA 4933436I20 gene 3.9069 0.0000
3 ENSMUSG00000026285 Pdcd1 programmed cell death 1 3.7657 0.0000
4 ENSMUSG00000109539 Gm44667 predicted gene 44667 3.3219 0.0014
5 ENSMUSG00000022962 Gart phosphoribosylglycinamide formyltransferase 2.7459 0.0000
6 ENSMUSG00000078784 1810022K09Rik RIKEN cDNA 1810022K09 gene 2.5850 0.0258
7 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 2.5850 0.0258
8 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.5850 0.0258
9 ENSMUSG00000101242 Gm28319 predicted gene 28319 2.5850 0.0258
10 ENSMUSG00000102569 Gm37041 predicted gene, 37041 2.5850 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000097777 Gm16794 predicted gene, 16794 -1.6550 0.0000
50853 ENSMUSG00000078487 Ankrd65 ankyrin repeat domain 65 -1.6548 0.0000
50852 ENSMUSG00000035898 Uba6 ubiquitin-like modifier activating enzyme 6 -1.6448 0.0000
50851 ENSMUSG00000038879 Nipal2 NIPA-like domain containing 2 -1.6436 0.0000
50850 ENSMUSG00000022523 Fgf12 fibroblast growth factor 12 -1.6425 0.0000
50849 ENSMUSG00000045087 S1pr5 sphingosine-1-phosphate receptor 5 -1.6381 0.0000
50848 ENSMUSG00000104429 2610034O05Rik RIKEN cDNA 2610034O05 gene -1.6365 0.0000
50847 ENSMUSG00000081803 Gm15282 predicted gene 15282 -1.6356 0.0037
50846 ENSMUSG00000034532 Fbxo16 F-box protein 16 -1.6352 0.0000
50845 ENSMUSG00000102876 Gm37136 predicted gene, 37136 -1.6345 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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