SHOGoiN Cell Methylome: GSM1370556
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370556 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M26 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000105290 | Gm43528 | predicted gene 43528 | 5.0444 | 0.0000 |
| 2 | ENSMUSG00000100580 | 4933436I20Rik | RIKEN cDNA 4933436I20 gene | 3.9069 | 0.0000 |
| 3 | ENSMUSG00000026285 | Pdcd1 | programmed cell death 1 | 3.7657 | 0.0000 |
| 4 | ENSMUSG00000109539 | Gm44667 | predicted gene 44667 | 3.3219 | 0.0014 |
| 5 | ENSMUSG00000022962 | Gart | phosphoribosylglycinamide formyltransferase | 2.7459 | 0.0000 |
| 6 | ENSMUSG00000078784 | 1810022K09Rik | RIKEN cDNA 1810022K09 gene | 2.5850 | 0.0258 |
| 7 | ENSMUSG00000081531 | Vmn1r-ps113 | vomeronasal 1 receptor, pseudogene 113 | 2.5850 | 0.0258 |
| 8 | ENSMUSG00000082540 | Vmn1r-ps112 | vomeronasal 1 receptor, pseudogene 112 | 2.5850 | 0.0258 |
| 9 | ENSMUSG00000101242 | Gm28319 | predicted gene 28319 | 2.5850 | 0.0258 |
| 10 | ENSMUSG00000102569 | Gm37041 | predicted gene, 37041 | 2.5850 | 0.0007 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000097777 | Gm16794 | predicted gene, 16794 | -1.6550 | 0.0000 |
| 50853 | ENSMUSG00000078487 | Ankrd65 | ankyrin repeat domain 65 | -1.6548 | 0.0000 |
| 50852 | ENSMUSG00000035898 | Uba6 | ubiquitin-like modifier activating enzyme 6 | -1.6448 | 0.0000 |
| 50851 | ENSMUSG00000038879 | Nipal2 | NIPA-like domain containing 2 | -1.6436 | 0.0000 |
| 50850 | ENSMUSG00000022523 | Fgf12 | fibroblast growth factor 12 | -1.6425 | 0.0000 |
| 50849 | ENSMUSG00000045087 | S1pr5 | sphingosine-1-phosphate receptor 5 | -1.6381 | 0.0000 |
| 50848 | ENSMUSG00000104429 | 2610034O05Rik | RIKEN cDNA 2610034O05 gene | -1.6365 | 0.0000 |
| 50847 | ENSMUSG00000081803 | Gm15282 | predicted gene 15282 | -1.6356 | 0.0037 |
| 50846 | ENSMUSG00000034532 | Fbxo16 | F-box protein 16 | -1.6352 | 0.0000 |
| 50845 | ENSMUSG00000102876 | Gm37136 | predicted gene, 37136 | -1.6345 | 0.0000 |
