SHOGoiN Cell Methylome: GSM1370556
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370556 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M26 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000105290 | Gm43528 | predicted gene 43528 | 5.0444 | 0.0000 |
| 2 | ENSMUSG00000100580 | 4933436I20Rik | RIKEN cDNA 4933436I20 gene | 3.9069 | 0.0000 |
| 3 | ENSMUSG00000026285 | Pdcd1 | programmed cell death 1 | 3.7657 | 0.0000 |
| 4 | ENSMUSG00000109539 | Gm44667 | predicted gene 44667 | 3.3219 | 0.0014 |
| 5 | ENSMUSG00000022962 | Gart | Mus musculus phosphoribosylglycinamide formyltransferase (Gart), transcript variant 2, mRNA. | 2.7459 | 0.0000 |
| 6 | ENSMUSG00000078784 | 1810022K09Rik | Mus musculus RIKEN cDNA 1810022K09 (1810022K09Rik), transcript variant 1, mRNA. | 2.5850 | 0.0258 |
| 7 | ENSMUSG00000081531 | Vmn1r-ps113 | vomeronasal 1 receptor, pseudogene 113 | 2.5850 | 0.0258 |
| 8 | ENSMUSG00000082540 | Vmn1r-ps112 | vomeronasal 1 receptor, pseudogene 112 | 2.5850 | 0.0258 |
| 9 | ENSMUSG00000101242 | Gm28319 | predicted gene 28319 | 2.5850 | 0.0258 |
| 10 | ENSMUSG00000102569 | Gm37041 | predicted gene, 37041 | 2.5850 | 0.0007 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000060112 | Olfr60 | NA | -2.3219 | 0.1261 |
| 50997 | ENSMUSG00000099843 | Gm7160 | predicted gene 7160 | -2.2808 | 0.0000 |
| 50996 | ENSMUSG00000099785 | Gm28425 | predicted gene 28425 | -2.2691 | 0.0000 |
| 50995 | ENSMUSG00000082884 | Gm13339 | predicted gene 13339 | -2.1951 | 0.0000 |
| 50994 | ENSMUSG00000079006 | Gm14151 | NA | -2.1887 | 0.0000 |
| 50993 | ENSMUSG00000037965 | Zc3h7a | zinc finger CCCH type containing 7 A | -2.1777 | 0.0000 |
| 50992 | ENSMUSG00000099421 | Gm29067 | predicted gene 29067 | -2.1699 | 0.0403 |
| 50991 | ENSMUSG00000086371 | Gm12478 | predicted gene 12478 | -2.1699 | 0.0403 |
| 50990 | ENSMUSG00000020462 | Cfap36 | Cilia- and flagella-associated protein 36 | -2.1686 | 0.0000 |
| 50989 | ENSMUSG00000104572 | Fbxw23 | F-box and WD-40 domain protein 23 | -2.1610 | 0.0021 |
