SHOGoiN Cell Methylome: GSM1370558

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370558


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M28Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109539 Gm44667 predicted gene 44667 3.4594 0.0002
2 ENSMUSG00000020620 Abca8b ATP-binding cassette, sub-family A (ABC1), member 8b 2.6455 0.0000
3 ENSMUSG00000069390 Olfr707 olfactory receptor 707 2.6240 0.0000
4 ENSMUSG00000109354 Olfr706 olfactory receptor 706 2.6240 0.0000
5 ENSMUSG00000017688 Hnf4g hepatocyte nuclear factor 4, gamma 2.5850 0.0002
6 ENSMUSG00000082971 Gm13517 predicted gene 13517 2.5850 0.0152
7 ENSMUSG00000098114 Gm26957 predicted gene, 26957 2.5850 0.0152
8 ENSMUSG00000107957 Gm44088 predicted gene, 44088 2.5000 0.0002
9 ENSMUSG00000027209 Fam227b family with sequence similarity 227, member B 2.3219 0.0000
10 ENSMUSG00000029281 Smr2 submaxillary gland androgen regulated protein 2 2.3219 0.0352

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000055210 Foxd2 forkhead box D2 -1.6140 0.0000
50853 ENSMUSG00000087652 Gm15918 predicted gene 15918 -1.6115 0.0000
50852 ENSMUSG00000024537 Psmg2 proteasome (prosome, macropain) assembly chaperone 2 -1.6076 0.0000
50851 ENSMUSG00000065589 Mir301 microRNA 301 -1.6072 0.0000
50850 ENSMUSG00000087475 4933406I18Rik RIKEN cDNA 4933406I18 gene -1.6069 0.0000
50849 ENSMUSG00000001017 Chtop chromatin target of PRMT1 -1.6050 0.0000
50848 ENSMUSG00000048495 Tyw5 tRNA-yW synthesizing protein 5 -1.6047 0.0000
50847 ENSMUSG00000032344 Cgas cyclic GMP-AMP synthase -1.6038 0.0000
50846 ENSMUSG00000040164 Kcns1 K+ voltage-gated channel, subfamily S, 1 -1.6035 0.0000
10 ENSMUSG00000029281 Smr2 submaxillary gland androgen regulated protein 2 2.3219 0.0352

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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