SHOGoiN Cell Methylome: GSM1370559

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370559


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M29Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000053678 Defb40 defensin beta 40 4.9069 0.0000
2 ENSMUSG00000101242 Gm28319 predicted gene 28319 3.3219 0.0006
3 ENSMUSG00000049882 Vcpkmt valosin containing protein lysine (K) methyltransferase 3.0000 0.0030
4 ENSMUSG00000065919 Gm24449 predicted gene, 24449 3.0000 0.0030
5 ENSMUSG00000050813 Olfr332 olfactory receptor 332 2.8074 0.0069
6 ENSMUSG00000077892 Gm22901 predicted gene, 22901 2.8074 0.0069
7 ENSMUSG00000104318 Pcdha7 protocadherin alpha 7 2.8074 0.0069
8 ENSMUSG00000067971 Olfr1321 olfactory receptor 1321 2.6455 0.0000
9 ENSMUSG00000084248 Gm11409 predicted gene 11409 2.4534 0.0006
10 ENSMUSG00000021975 Ints9 integrator complex subunit 9 2.3219 0.0013

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000085026 Srrm3os serine/arginine repetitive matrix 3, opposite strand -1.7436 0.0000
50853 ENSMUSG00000031644 Nek1 NIMA (never in mitosis gene a)-related expressed kinase 1 -1.7434 0.0000
50852 ENSMUSG00000073988 Ttpa tocopherol (alpha) transfer protein -1.7396 0.0000
50851 ENSMUSG00000096774 Gm22113 predicted gene, 22113 -1.7374 0.0000
50850 ENSMUSG00000097814 Panct2 pluripotency-associated noncoding transcript 2 -1.7359 0.0000
50849 ENSMUSG00000075002 Gm813 predicted gene 813 -1.7331 0.0003
50848 ENSMUSG00000101542 Gm29303 predicted gene 29303 -1.7297 0.0001
50847 ENSMUSG00000027427 Polr3f polymerase (RNA) III (DNA directed) polypeptide F -1.7255 0.0000
50846 ENSMUSG00000052783 Grk4 G protein-coupled receptor kinase 4 -1.7254 0.0000
50845 ENSMUSG00000036611 Eepd1 endonuclease/exonuclease/phosphatase family domain containing 1 -1.7236 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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