SHOGoiN Cell Methylome: GSM1370560
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370560 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M30 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000109354 | Olfr706 | NA | 5.1293 | 0.0000 |
| 2 | ENSMUSG00000082886 | Gm5386 | predicted pseudogene 5386 | 2.8074 | 0.0000 |
| 3 | ENSMUSG00000107135 | Gm43806 | predicted gene 43806 | 2.8074 | 0.0000 |
| 4 | ENSMUSG00000104083 | Gm29739 | predicted gene, 29739 | 2.5850 | 0.0001 |
| 5 | ENSMUSG00000110158 | Gm45690 | predicted gene 45690 | 2.5850 | 0.0001 |
| 6 | ENSMUSG00000072574 | Gm17184 | predicted gene 17184 | 2.3219 | 0.0007 |
| 7 | ENSMUSG00000084441 | Gm26255 | predicted gene, 26255 | 2.3219 | 0.0007 |
| 8 | ENSMUSG00000085122 | 4933404K08Rik | RIKEN cDNA 4933404K08 gene | 2.3219 | 0.0000 |
| 9 | ENSMUSG00000091466 | Gm17183 | predicted gene 17183 | 2.3219 | 0.0007 |
| 10 | ENSMUSG00000106469 | C030015E24Rik | RIKEN cDNA C030015E24 gene | 2.3219 | 0.0007 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000061136 | Prpf40a | Pre-mRNA-processing factor 40 homolog A | -2.2113 | 0.0000 |
| 50997 | ENSMUSG00000030325 | Klrb1c | NA | -2.2106 | 0.0385 |
| 50996 | ENSMUSG00000098037 | Gm7765 | predicted gene 7765 | -2.2095 | 0.0000 |
| 50995 | ENSMUSG00000026960 | Arl6ip6 | ADP-ribosylation factor-like protein 6-interacting protein 6 | -2.2038 | 0.0000 |
| 50994 | ENSMUSG00000089982 | Gm7568 | predicted gene 7568 | -2.1699 | 1.0000 |
| 50993 | ENSMUSG00000036298 | Slc2a13 | solute carrier family 2 (facilitated glucose transporter), member 13 | -2.1685 | 0.0000 |
| 50992 | ENSMUSG00000111210 | Gm18378 | predicted gene, 18378 | -2.1610 | 0.3837 |
| 50991 | ENSMUSG00000095632 | Vmn1r175 | vomeronasal 1 receptor 175 | -2.1610 | 0.2351 |
| 50990 | ENSMUSG00000083748 | Gm11662 | predicted gene 11662 | -2.1610 | 0.2351 |
| 50989 | ENSMUSG00000073730 | 4933415F23Rik | RIKEN cDNA 4933415F23 gene | -2.1610 | 0.6079 |
