SHOGoiN Cell Methylome: GSM1370560

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370560


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M30Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 5.1293 0.0000
2 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.8074 0.0000
3 ENSMUSG00000107135 Gm43806 predicted gene 43806 2.8074 0.0000
4 ENSMUSG00000104083 Gm29739 predicted gene, 29739 2.5850 0.0001
5 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.5850 0.0001
6 ENSMUSG00000072574 Gm17184 predicted gene 17184 2.3219 0.0007
7 ENSMUSG00000084441 Gm26255 predicted gene, 26255 2.3219 0.0007
8 ENSMUSG00000085122 4933404K08Rik RIKEN cDNA 4933404K08 gene 2.3219 0.0000
9 ENSMUSG00000091466 Gm17183 predicted gene 17183 2.3219 0.0007
10 ENSMUSG00000106469 C030015E24Rik RIKEN cDNA C030015E24 gene 2.3219 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000095646 Trav10n T cell receptor alpha variable 10N -1.8617 0.3687
50853 ENSMUSG00000088464 Mir1970 microRNA 1970 -1.8617 0.3687
50852 ENSMUSG00000088333 Gm27396 predicted gene, 27396 -1.8617 0.3687
50851 ENSMUSG00000086926 Gm6226 predicted gene 6226 -1.8617 0.3687
50850 ENSMUSG00000106019 Gm43672 predicted gene 43672 -1.8594 0.0000
50849 ENSMUSG00000064412 Gm22246 predicted gene, 22246 -1.8586 0.0000
50848 ENSMUSG00000064453 Snord21 small nucleolar RNA, C/D box 21 -1.8579 0.0000
50847 ENSMUSG00000027808 Serp1 stress-associated endoplasmic reticulum protein 1 -1.8530 0.0000
50846 ENSMUSG00000027811 4930579G24Rik RIKEN cDNA 4930579G24 gene -1.8502 0.0000
50845 ENSMUSG00000096188 Cmtm4 CKLF-like MARVEL transmembrane domain containing 4 -1.8495 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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