SHOGoiN Cell Methylome: GSM1370560
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370560 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M30 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000109354 | Olfr706 | olfactory receptor 706 | 5.1293 | 0.0000 |
| 2 | ENSMUSG00000082886 | Gm5386 | predicted pseudogene 5386 | 2.8074 | 0.0000 |
| 3 | ENSMUSG00000107135 | Gm43806 | predicted gene 43806 | 2.8074 | 0.0000 |
| 4 | ENSMUSG00000104083 | Gm29739 | predicted gene, 29739 | 2.5850 | 0.0001 |
| 5 | ENSMUSG00000110158 | Gm45690 | predicted gene 45690 | 2.5850 | 0.0001 |
| 6 | ENSMUSG00000072574 | Gm17184 | predicted gene 17184 | 2.3219 | 0.0007 |
| 7 | ENSMUSG00000084441 | Gm26255 | predicted gene, 26255 | 2.3219 | 0.0007 |
| 8 | ENSMUSG00000085122 | 4933404K08Rik | RIKEN cDNA 4933404K08 gene | 2.3219 | 0.0000 |
| 9 | ENSMUSG00000091466 | Gm17183 | predicted gene 17183 | 2.3219 | 0.0007 |
| 10 | ENSMUSG00000106469 | C030015E24Rik | RIKEN cDNA C030015E24 gene | 2.3219 | 0.0007 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000095646 | Trav10n | T cell receptor alpha variable 10N | -1.8617 | 0.3687 |
| 50853 | ENSMUSG00000088464 | Mir1970 | microRNA 1970 | -1.8617 | 0.3687 |
| 50852 | ENSMUSG00000088333 | Gm27396 | predicted gene, 27396 | -1.8617 | 0.3687 |
| 50851 | ENSMUSG00000086926 | Gm6226 | predicted gene 6226 | -1.8617 | 0.3687 |
| 50850 | ENSMUSG00000106019 | Gm43672 | predicted gene 43672 | -1.8594 | 0.0000 |
| 50849 | ENSMUSG00000064412 | Gm22246 | predicted gene, 22246 | -1.8586 | 0.0000 |
| 50848 | ENSMUSG00000064453 | Snord21 | small nucleolar RNA, C/D box 21 | -1.8579 | 0.0000 |
| 50847 | ENSMUSG00000027808 | Serp1 | stress-associated endoplasmic reticulum protein 1 | -1.8530 | 0.0000 |
| 50846 | ENSMUSG00000027811 | 4930579G24Rik | RIKEN cDNA 4930579G24 gene | -1.8502 | 0.0000 |
| 50845 | ENSMUSG00000096188 | Cmtm4 | CKLF-like MARVEL transmembrane domain containing 4 | -1.8495 | 0.0000 |
