Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM1370560
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370560
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M30
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000109354
Olfr706
olfactory receptor 706
5.1293
0.0000
2
ENSMUSG00000082886
Gm5386
predicted pseudogene 5386
2.8074
0.0000
3
ENSMUSG00000107135
Gm43806
predicted gene 43806
2.8074
0.0000
4
ENSMUSG00000104083
Gm29739
predicted gene, 29739
2.5850
0.0001
5
ENSMUSG00000110158
Gm45690
predicted gene 45690
2.5850
0.0001
6
ENSMUSG00000072574
Gm17184
predicted gene 17184
2.3219
0.0007
7
ENSMUSG00000084441
Gm26255
predicted gene, 26255
2.3219
0.0007
8
ENSMUSG00000085122
4933404K08Rik
RIKEN cDNA 4933404K08 gene
2.3219
0.0000
9
ENSMUSG00000091466
Gm17183
predicted gene 17183
2.3219
0.0007
10
ENSMUSG00000106469
C030015E24Rik
RIKEN cDNA C030015E24 gene
2.3219
0.0007
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000021712
Trim23
tripartite motif-containing 23
-1.2694
0.0040
47080
ENSMUSG00000107037
Gm29793
predicted gene, 29793
-1.2694
0.0061
47079
ENSMUSG00000021974
Fgf9
fibroblast growth factor 9
-1.2692
0.0000
47078
ENSMUSG00000055210
Foxd2
forkhead box D2
-1.2692
0.0000
47077
ENSMUSG00000112426
Gm47200
predicted gene, 47200
-1.2692
0.0000
47076
ENSMUSG00000089926
Gm15734
predicted gene 15734
-1.2691
1.0000
47075
ENSMUSG00000058301
Upf1
UPF1 regulator of nonsense transcripts homolog (yeast)
-1.2690
0.0000
47074
ENSMUSG00000027365
Trpm7
transient receptor potential cation channel, subfamily M, member 7
-1.2690
0.0000
47073
ENSMUSG00000065734
Snord49a
small nucleolar RNA, C/D box 49A
-1.2690
0.0001
47072
ENSMUSG00000020755
Sap30bp
SAP30 binding protein
-1.2690
0.0027
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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