Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370560

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1370560 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP041257	SRP041257_M30	Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000109354	Olfr706	olfactory receptor 706	5.1293	0.0000
2	ENSMUSG00000082886	Gm5386	predicted pseudogene 5386	2.8074	0.0000
3	ENSMUSG00000107135	Gm43806	predicted gene 43806	2.8074	0.0000
4	ENSMUSG00000104083	Gm29739	predicted gene, 29739	2.5850	0.0001
5	ENSMUSG00000110158	Gm45690	predicted gene 45690	2.5850	0.0001
6	ENSMUSG00000072574	Gm17184	predicted gene 17184	2.3219	0.0007
7	ENSMUSG00000084441	Gm26255	predicted gene, 26255	2.3219	0.0007
8	ENSMUSG00000085122	4933404K08Rik	RIKEN cDNA 4933404K08 gene	2.3219	0.0000
9	ENSMUSG00000091466	Gm17183	predicted gene 17183	2.3219	0.0007
10	ENSMUSG00000106469	C030015E24Rik	RIKEN cDNA C030015E24 gene	2.3219	0.0007

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000021712	Trim23	tripartite motif-containing 23	-1.2694	0.0040
47080	ENSMUSG00000107037	Gm29793	predicted gene, 29793	-1.2694	0.0061
47079	ENSMUSG00000021974	Fgf9	fibroblast growth factor 9	-1.2692	0.0000
47078	ENSMUSG00000055210	Foxd2	forkhead box D2	-1.2692	0.0000
47077	ENSMUSG00000112426	Gm47200	predicted gene, 47200	-1.2692	0.0000
47076	ENSMUSG00000089926	Gm15734	predicted gene 15734	-1.2691	1.0000
47075	ENSMUSG00000058301	Upf1	UPF1 regulator of nonsense transcripts homolog (yeast)	-1.2690	0.0000
47074	ENSMUSG00000027365	Trpm7	transient receptor potential cation channel, subfamily M, member 7	-1.2690	0.0000
47073	ENSMUSG00000065734	Snord49a	small nucleolar RNA, C/D box 49A	-1.2690	0.0001
47072	ENSMUSG00000020755	Sap30bp	SAP30 binding protein	-1.2690	0.0027

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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