Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370560

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370560


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M30Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 5.1293 0.0000
2 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.8074 0.0000
3 ENSMUSG00000107135 Gm43806 predicted gene 43806 2.8074 0.0000
4 ENSMUSG00000104083 Gm29739 predicted gene, 29739 2.5850 0.0001
5 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.5850 0.0001
6 ENSMUSG00000072574 Gm17184 predicted gene 17184 2.3219 0.0007
7 ENSMUSG00000084441 Gm26255 predicted gene, 26255 2.3219 0.0007
8 ENSMUSG00000085122 4933404K08Rik RIKEN cDNA 4933404K08 gene 2.3219 0.0000
9 ENSMUSG00000091466 Gm17183 predicted gene 17183 2.3219 0.0007
10 ENSMUSG00000106469 C030015E24Rik RIKEN cDNA C030015E24 gene 2.3219 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000021712 Trim23 tripartite motif-containing 23 -1.2694 0.0040
47080 ENSMUSG00000107037 Gm29793 predicted gene, 29793 -1.2694 0.0061
47079 ENSMUSG00000021974 Fgf9 fibroblast growth factor 9 -1.2692 0.0000
47078 ENSMUSG00000055210 Foxd2 forkhead box D2 -1.2692 0.0000
47077 ENSMUSG00000112426 Gm47200 predicted gene, 47200 -1.2692 0.0000
47076 ENSMUSG00000089926 Gm15734 predicted gene 15734 -1.2691 1.0000
47075 ENSMUSG00000058301 Upf1 UPF1 regulator of nonsense transcripts homolog (yeast) -1.2690 0.0000
47074 ENSMUSG00000027365 Trpm7 transient receptor potential cation channel, subfamily M, member 7 -1.2690 0.0000
47073 ENSMUSG00000065734 Snord49a small nucleolar RNA, C/D box 49A -1.2690 0.0001
47072 ENSMUSG00000020755 Sap30bp SAP30 binding protein -1.2690 0.0027

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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