Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370561

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370561


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M31Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109539 Gm44667 predicted gene 44667 4.0000 0.0001
2 ENSMUSG00000112452 Gm48075 predicted gene, 48075 3.8074 0.0004
3 ENSMUSG00000105290 Gm43528 predicted gene 43528 3.5698 0.0000
4 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 3.1699 0.0095
5 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.1699 0.0095
6 ENSMUSG00000089994 Gm16239 predicted gene 16239 2.9037 0.0004
7 ENSMUSG00000030887 Pdzd9 PDZ domain containing 9 2.8074 0.0347
8 ENSMUSG00000047344 Lancl3 LanC lantibiotic synthetase component C-like 3 (bacterial) 2.8074 0.0347
9 ENSMUSG00000052005 Gm9864 predicted gene 9864 2.8074 0.0000
10 ENSMUSG00000087677 Gm15226 predicted gene 15226 2.8074 0.0347

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000024811 Tnks2 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 -0.7925 0.0000
47080 ENSMUSG00000022484 Hoxc10 homeobox C10 -0.7925 0.0997
47079 ENSMUSG00000100096 Gm28760 predicted gene 28760 -0.7921 0.0000
47078 ENSMUSG00000020392 Cdkn2aipnl CDKN2A interacting protein N-terminal like -0.7919 0.0000
47077 ENSMUSG00000092131 BC050972 cDNA sequence BC050972 -0.7916 0.0000
47076 ENSMUSG00000036676 Tmtc3 transmembrane and tetratricopeptide repeat containing 3 -0.7916 0.0003
47075 ENSMUSG00000049659 Aftph aftiphilin -0.7909 0.0000
47074 ENSMUSG00000043154 Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha -0.7905 0.0000
47073 ENSMUSG00000049287 Iba57 IBA57 homolog, iron-sulfur cluster assembly -0.7904 0.0000
47072 ENSMUSG00000025147 Mob2 MOB kinase activator 2 -0.7903 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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