Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370561

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1370561 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP041257	SRP041257_M31	Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000109539	Gm44667	predicted gene 44667	4.0000	0.0001
2	ENSMUSG00000112452	Gm48075	predicted gene, 48075	3.8074	0.0004
3	ENSMUSG00000105290	Gm43528	predicted gene 43528	3.5698	0.0000
4	ENSMUSG00000081531	Vmn1r-ps113	vomeronasal 1 receptor, pseudogene 113	3.1699	0.0095
5	ENSMUSG00000082540	Vmn1r-ps112	vomeronasal 1 receptor, pseudogene 112	3.1699	0.0095
6	ENSMUSG00000089994	Gm16239	predicted gene 16239	2.9037	0.0004
7	ENSMUSG00000030887	Pdzd9	PDZ domain containing 9	2.8074	0.0347
8	ENSMUSG00000047344	Lancl3	LanC lantibiotic synthetase component C-like 3 (bacterial)	2.8074	0.0347
9	ENSMUSG00000052005	Gm9864	predicted gene 9864	2.8074	0.0000
10	ENSMUSG00000087677	Gm15226	predicted gene 15226	2.8074	0.0347

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000024811	Tnks2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	-0.7925	0.0000
47080	ENSMUSG00000022484	Hoxc10	homeobox C10	-0.7925	0.0997
47079	ENSMUSG00000100096	Gm28760	predicted gene 28760	-0.7921	0.0000
47078	ENSMUSG00000020392	Cdkn2aipnl	CDKN2A interacting protein N-terminal like	-0.7919	0.0000
47077	ENSMUSG00000092131	BC050972	cDNA sequence BC050972	-0.7916	0.0000
47076	ENSMUSG00000036676	Tmtc3	transmembrane and tetratricopeptide repeat containing 3	-0.7916	0.0003
47075	ENSMUSG00000049659	Aftph	aftiphilin	-0.7909	0.0000
47074	ENSMUSG00000043154	Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha	-0.7905	0.0000
47073	ENSMUSG00000049287	Iba57	IBA57 homolog, iron-sulfur cluster assembly	-0.7904	0.0000
47072	ENSMUSG00000025147	Mob2	MOB kinase activator 2	-0.7903	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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