SHOGoiN Cell Methylome: GSM1370561

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370561


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M31Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109539 Gm44667 predicted gene 44667 4.0000 0.0001
2 ENSMUSG00000112452 Gm48075 predicted gene, 48075 3.8074 0.0004
3 ENSMUSG00000105290 Gm43528 predicted gene 43528 3.5698 0.0000
4 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 3.1699 0.0095
5 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.1699 0.0095
6 ENSMUSG00000089994 Gm16239 predicted gene 16239 2.9037 0.0004
7 ENSMUSG00000030887 Pdzd9 PDZ domain containing 9 2.8074 0.0347
8 ENSMUSG00000047344 Lancl3 LanC lantibiotic synthetase component C-like 3 (bacterial) 2.8074 0.0347
9 ENSMUSG00000052005 Gm9864 predicted gene 9864 2.8074 0.0000
10 ENSMUSG00000087677 Gm15226 predicted gene 15226 2.8074 0.0347

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000046351 Zfp322a zinc finger protein 322A -1.8317 0.0000
50853 ENSMUSG00000020954 Strn3 striatin, calmodulin binding protein 3 -1.8306 0.0000
50852 ENSMUSG00000097288 Gm2155 predicted gene 2155 -1.8305 0.0000
50851 ENSMUSG00000021339 Mrs2 MRS2 magnesium transporter -1.8299 0.0000
50850 ENSMUSG00000108421 Gm44718 predicted gene 44718 -1.8262 0.0000
50849 ENSMUSG00000031149 Praf2 PRA1 domain family 2 -1.8249 0.0000
50848 ENSMUSG00000001128 Cfp complement factor properdin -1.8229 0.0000
50847 ENSMUSG00000027602 Map1lc3a microtubule-associated protein 1 light chain 3 alpha -1.8194 0.0000
50846 ENSMUSG00000086749 Gm12037 predicted gene 12037 -1.8186 0.0000
50845 ENSMUSG00000028398 Dmac1 distal membrane arm assembly complex 1 -1.8113 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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