SHOGoiN Cell Methylome: GSM1370561
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370561 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M31 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000109539 | Gm44667 | predicted gene 44667 | 4.0000 | 0.0001 |
| 2 | ENSMUSG00000112452 | Gm48075 | predicted gene, 48075 | 3.8074 | 0.0004 |
| 3 | ENSMUSG00000105290 | Gm43528 | predicted gene 43528 | 3.5698 | 0.0000 |
| 4 | ENSMUSG00000081531 | Vmn1r-ps113 | vomeronasal 1 receptor, pseudogene 113 | 3.1699 | 0.0095 |
| 5 | ENSMUSG00000082540 | Vmn1r-ps112 | vomeronasal 1 receptor, pseudogene 112 | 3.1699 | 0.0095 |
| 6 | ENSMUSG00000089994 | Gm16239 | predicted gene 16239 | 2.9037 | 0.0004 |
| 7 | ENSMUSG00000030887 | Pdzd9 | PDZ domain containing 9 | 2.8074 | 0.0347 |
| 8 | ENSMUSG00000047344 | Lancl3 | LanC lantibiotic synthetase component C-like 3 (bacterial) | 2.8074 | 0.0347 |
| 9 | ENSMUSG00000052005 | Gm9864 | predicted gene 9864 | 2.8074 | 0.0000 |
| 10 | ENSMUSG00000087677 | Gm15226 | predicted gene 15226 | 2.8074 | 0.0347 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000046351 | Zfp322a | zinc finger protein 322A | -1.8317 | 0.0000 |
| 50853 | ENSMUSG00000020954 | Strn3 | striatin, calmodulin binding protein 3 | -1.8306 | 0.0000 |
| 50852 | ENSMUSG00000097288 | Gm2155 | predicted gene 2155 | -1.8305 | 0.0000 |
| 50851 | ENSMUSG00000021339 | Mrs2 | MRS2 magnesium transporter | -1.8299 | 0.0000 |
| 50850 | ENSMUSG00000108421 | Gm44718 | predicted gene 44718 | -1.8262 | 0.0000 |
| 50849 | ENSMUSG00000031149 | Praf2 | PRA1 domain family 2 | -1.8249 | 0.0000 |
| 50848 | ENSMUSG00000001128 | Cfp | complement factor properdin | -1.8229 | 0.0000 |
| 50847 | ENSMUSG00000027602 | Map1lc3a | microtubule-associated protein 1 light chain 3 alpha | -1.8194 | 0.0000 |
| 50846 | ENSMUSG00000086749 | Gm12037 | predicted gene 12037 | -1.8186 | 0.0000 |
| 50845 | ENSMUSG00000028398 | Dmac1 | distal membrane arm assembly complex 1 | -1.8113 | 0.0000 |
