Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1370561
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370561
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M31
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000109539
Gm44667
predicted gene 44667
4.0000
0.0001
2
ENSMUSG00000112452
Gm48075
predicted gene, 48075
3.8074
0.0004
3
ENSMUSG00000105290
Gm43528
predicted gene 43528
3.5698
0.0000
4
ENSMUSG00000081531
Vmn1r-ps113
vomeronasal 1 receptor, pseudogene 113
3.1699
0.0095
5
ENSMUSG00000082540
Vmn1r-ps112
vomeronasal 1 receptor, pseudogene 112
3.1699
0.0095
6
ENSMUSG00000089994
Gm16239
predicted gene 16239
2.9037
0.0004
7
ENSMUSG00000030887
Pdzd9
PDZ domain containing 9
2.8074
0.0347
8
ENSMUSG00000047344
Lancl3
LanC lantibiotic synthetase component C-like 3 (bacterial)
2.8074
0.0347
9
ENSMUSG00000052005
Gm9864
predicted gene 9864
2.8074
0.0000
10
ENSMUSG00000087677
Gm15226
predicted gene 15226
2.8074
0.0347
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000024811
Tnks2
tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
-0.7925
0.0000
47080
ENSMUSG00000022484
Hoxc10
homeobox C10
-0.7925
0.0997
47079
ENSMUSG00000100096
Gm28760
predicted gene 28760
-0.7921
0.0000
47078
ENSMUSG00000020392
Cdkn2aipnl
CDKN2A interacting protein N-terminal like
-0.7919
0.0000
47077
ENSMUSG00000092131
BC050972
cDNA sequence BC050972
-0.7916
0.0000
47076
ENSMUSG00000036676
Tmtc3
transmembrane and tetratricopeptide repeat containing 3
-0.7916
0.0003
47075
ENSMUSG00000049659
Aftph
aftiphilin
-0.7909
0.0000
47074
ENSMUSG00000043154
Ppp2r3a
protein phosphatase 2, regulatory subunit B'', alpha
-0.7905
0.0000
47073
ENSMUSG00000049287
Iba57
IBA57 homolog, iron-sulfur cluster assembly
-0.7904
0.0000
47072
ENSMUSG00000025147
Mob2
MOB kinase activator 2
-0.7903
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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