Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370562

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370562


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M32Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000069390 Olfr707 olfactory receptor 707 4.9069 0.0000
2 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 4.3923 0.0000
3 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.5850 0.0011
4 ENSMUSG00000102267 9530003O04Rik RIKEN cDNA 9530003O04 gene 3.3219 0.0042
5 ENSMUSG00000110940 Olfr274-ps1 olfactory receptor 274, pseudogene 1 3.0000 0.0162
6 ENSMUSG00000105290 Gm43528 predicted gene 43528 2.6962 0.0000
7 ENSMUSG00000043384 Gprasp1 G protein-coupled receptor associated sorting protein 1 2.6427 0.0001
8 ENSMUSG00000072964 Bhlhb9 basic helix-loop-helix domain containing, class B9 2.6427 0.0001
9 ENSMUSG00000036036 Zfp57 zinc finger protein 57 2.5850 0.0636
10 ENSMUSG00000104509 Gm33994 predicted gene, 33994 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000022205 Sub1 SUB1 homolog, transcriptional regulator -0.7676 0.0000
47080 ENSMUSG00000021381 Barx1 BarH-like homeobox 1 -0.7676 0.0000
47079 ENSMUSG00000097523 1700022N22Rik RIKEN cDNA 1700022N22 gene -0.7675 0.0000
47078 ENSMUSG00000037579 Kcnh3 potassium voltage-gated channel, subfamily H (eag-related), member 3 -0.7674 0.0000
47077 ENSMUSG00000064225 Paqr9 progestin and adipoQ receptor family member IX -0.7671 0.0000
47076 ENSMUSG00000021248 Tmed10 transmembrane p24 trafficking protein 10 -0.7671 0.0000
47075 ENSMUSG00000066568 Lsm14a LSM14A mRNA processing body assembly factor -0.7671 0.0000
47074 ENSMUSG00000082727 Gm13260 predicted gene 13260 -0.7670 0.0000
47073 ENSMUSG00000006270 Vax1 ventral anterior homeobox 1 -0.7668 0.0000
47072 ENSMUSG00000041696 Rasl12 RAS-like, family 12 -0.7668 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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