Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM1370562
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370562
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M32
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000069390
Olfr707
olfactory receptor 707
4.9069
0.0000
2
ENSMUSG00000040370
Etfrf1
electron transfer flavoprotein regulatory factor 1
4.3923
0.0000
3
ENSMUSG00000082540
Vmn1r-ps112
vomeronasal 1 receptor, pseudogene 112
3.5850
0.0011
4
ENSMUSG00000102267
9530003O04Rik
RIKEN cDNA 9530003O04 gene
3.3219
0.0042
5
ENSMUSG00000110940
Olfr274-ps1
olfactory receptor 274, pseudogene 1
3.0000
0.0162
6
ENSMUSG00000105290
Gm43528
predicted gene 43528
2.6962
0.0000
7
ENSMUSG00000043384
Gprasp1
G protein-coupled receptor associated sorting protein 1
2.6427
0.0001
8
ENSMUSG00000072964
Bhlhb9
basic helix-loop-helix domain containing, class B9
2.6427
0.0001
9
ENSMUSG00000036036
Zfp57
zinc finger protein 57
2.5850
0.0636
10
ENSMUSG00000104509
Gm33994
predicted gene, 33994
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000022205
Sub1
SUB1 homolog, transcriptional regulator
-0.7676
0.0000
47080
ENSMUSG00000021381
Barx1
BarH-like homeobox 1
-0.7676
0.0000
47079
ENSMUSG00000097523
1700022N22Rik
RIKEN cDNA 1700022N22 gene
-0.7675
0.0000
47078
ENSMUSG00000037579
Kcnh3
potassium voltage-gated channel, subfamily H (eag-related), member 3
-0.7674
0.0000
47077
ENSMUSG00000064225
Paqr9
progestin and adipoQ receptor family member IX
-0.7671
0.0000
47076
ENSMUSG00000021248
Tmed10
transmembrane p24 trafficking protein 10
-0.7671
0.0000
47075
ENSMUSG00000066568
Lsm14a
LSM14A mRNA processing body assembly factor
-0.7671
0.0000
47074
ENSMUSG00000082727
Gm13260
predicted gene 13260
-0.7670
0.0000
47073
ENSMUSG00000006270
Vax1
ventral anterior homeobox 1
-0.7668
0.0000
47072
ENSMUSG00000041696
Rasl12
RAS-like, family 12
-0.7668
0.0001
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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