Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370562

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1370562 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP041257	SRP041257_M32	Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000069390	Olfr707	olfactory receptor 707	4.9069	0.0000
2	ENSMUSG00000040370	Etfrf1	electron transfer flavoprotein regulatory factor 1	4.3923	0.0000
3	ENSMUSG00000082540	Vmn1r-ps112	vomeronasal 1 receptor, pseudogene 112	3.5850	0.0011
4	ENSMUSG00000102267	9530003O04Rik	RIKEN cDNA 9530003O04 gene	3.3219	0.0042
5	ENSMUSG00000110940	Olfr274-ps1	olfactory receptor 274, pseudogene 1	3.0000	0.0162
6	ENSMUSG00000105290	Gm43528	predicted gene 43528	2.6962	0.0000
7	ENSMUSG00000043384	Gprasp1	G protein-coupled receptor associated sorting protein 1	2.6427	0.0001
8	ENSMUSG00000072964	Bhlhb9	basic helix-loop-helix domain containing, class B9	2.6427	0.0001
9	ENSMUSG00000036036	Zfp57	zinc finger protein 57	2.5850	0.0636
10	ENSMUSG00000104509	Gm33994	predicted gene, 33994	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000022205	Sub1	SUB1 homolog, transcriptional regulator	-0.7676	0.0000
47080	ENSMUSG00000021381	Barx1	BarH-like homeobox 1	-0.7676	0.0000
47079	ENSMUSG00000097523	1700022N22Rik	RIKEN cDNA 1700022N22 gene	-0.7675	0.0000
47078	ENSMUSG00000037579	Kcnh3	potassium voltage-gated channel, subfamily H (eag-related), member 3	-0.7674	0.0000
47077	ENSMUSG00000064225	Paqr9	progestin and adipoQ receptor family member IX	-0.7671	0.0000
47076	ENSMUSG00000021248	Tmed10	transmembrane p24 trafficking protein 10	-0.7671	0.0000
47075	ENSMUSG00000066568	Lsm14a	LSM14A mRNA processing body assembly factor	-0.7671	0.0000
47074	ENSMUSG00000082727	Gm13260	predicted gene 13260	-0.7670	0.0000
47073	ENSMUSG00000006270	Vax1	ventral anterior homeobox 1	-0.7668	0.0000
47072	ENSMUSG00000041696	Rasl12	RAS-like, family 12	-0.7668	0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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