SHOGoiN Cell Methylome: GSM1370562
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370562 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M32 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000069390 | Olfr707 | olfactory receptor 707 | 4.9069 | 0.0000 |
| 2 | ENSMUSG00000040370 | Etfrf1 | electron transfer flavoprotein regulatory factor 1 | 4.3923 | 0.0000 |
| 3 | ENSMUSG00000082540 | Vmn1r-ps112 | vomeronasal 1 receptor, pseudogene 112 | 3.5850 | 0.0011 |
| 4 | ENSMUSG00000102267 | 9530003O04Rik | RIKEN cDNA 9530003O04 gene | 3.3219 | 0.0042 |
| 5 | ENSMUSG00000110940 | Olfr274-ps1 | olfactory receptor 274, pseudogene 1 | 3.0000 | 0.0162 |
| 6 | ENSMUSG00000105290 | Gm43528 | predicted gene 43528 | 2.6962 | 0.0000 |
| 7 | ENSMUSG00000043384 | Gprasp1 | G protein-coupled receptor associated sorting protein 1 | 2.6427 | 0.0001 |
| 8 | ENSMUSG00000072964 | Bhlhb9 | basic helix-loop-helix domain containing, class B9 | 2.6427 | 0.0001 |
| 9 | ENSMUSG00000036036 | Zfp57 | zinc finger protein 57 | 2.5850 | 0.0636 |
| 10 | ENSMUSG00000104509 | Gm33994 | predicted gene, 33994 | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000021466 | Ptch1 | patched 1 | -1.5817 | 0.0000 |
| 50853 | ENSMUSG00000089371 | Mir1938 | microRNA 1938 | -1.5798 | 0.0000 |
| 50852 | ENSMUSG00000024712 | Rfk | riboflavin kinase | -1.5733 | 0.0000 |
| 50851 | ENSMUSG00000108466 | Gm44771 | predicted gene 44771 | -1.5681 | 0.0000 |
| 50850 | ENSMUSG00000029169 | Dhx15 | DEAH (Asp-Glu-Ala-His) box polypeptide 15 | -1.5662 | 0.0000 |
| 50849 | ENSMUSG00000073563 | Csnk1g3 | casein kinase 1, gamma 3 | -1.5646 | 0.0000 |
| 50848 | ENSMUSG00000108348 | Gm42372 | predicted gene, 42372 | -1.5620 | 0.0000 |
| 50847 | ENSMUSG00000001380 | Hars | histidyl-tRNA synthetase | -1.5611 | 0.0000 |
| 50846 | ENSMUSG00000034575 | Tent4a | terminal nucleotidyltransferase 4A | -1.5608 | 0.0000 |
| 50845 | ENSMUSG00000102758 | Naaladl2 | N-acetylated alpha-linked acidic dipeptidase-like 2 | -1.5550 | 0.0000 |
