Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370563

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370563


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M33Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.8074 0.0046
2 ENSMUSG00000040254 Sema3d sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D 2.7233 0.0000
3 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.5850 0.0112
4 ENSMUSG00000083425 Gm13992 predicted gene 13992 2.5850 0.0112
6 ENSMUSG00000032766 Gng11 guanine nucleotide binding protein (G protein), gamma 11 2.3219 0.0275
7 ENSMUSG00000094356 Igkv8-28 immunoglobulin kappa variable 8-28 2.3219 0.0275
8 ENSMUSG00000102167 Gm2345 predicted gene 2345 2.3219 0.0000
9 ENSMUSG00000103465 Gm37617 predicted gene, 37617 2.3219 0.0275
10 ENSMUSG00000106742 Gm42474 predicted gene 42474 2.3219 0.0275
47072 ENSMUSG00000027239 Mdk midkine -0.9130 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000098465 Mir1668 microRNA 1668 -0.9139 0.0000
47080 ENSMUSG00000038594 Cep85l centrosomal protein 85-like -0.9138 0.0000
47078 ENSMUSG00000035351 Nup37 nucleoporin 37 -0.9134 0.0000
47077 ENSMUSG00000101731 3830432H09Rik RIKEN cDNA 3830432H09 gene -0.9132 0.0000
47076 ENSMUSG00000089737 Gm15688 predicted gene 15688 -0.9130 0.0001
47075 ENSMUSG00000070526 Peg12 paternally expressed 12 -0.9130 0.0000
47074 ENSMUSG00000031634 Ufsp2 UFM1-specific peptidase 2 -0.9130 0.0001
47073 ENSMUSG00000033207 Mamdc2 MAM domain containing 2 -0.9130 0.0021
47072 ENSMUSG00000027239 Mdk midkine -0.9130 0.0000
10 ENSMUSG00000106742 Gm42474 predicted gene 42474 2.3219 0.0275

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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