SHOGoiN Cell Methylome: GSM1370563

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370563


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M33Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.8074 0.0046
2 ENSMUSG00000040254 Sema3d sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D 2.7233 0.0000
3 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.5850 0.0112
4 ENSMUSG00000083425 Gm13992 predicted gene 13992 2.5850 0.0112
5 ENSMUSG00000088596 Gm24602 predicted gene, 24602 2.5850 0.0001
6 ENSMUSG00000032766 Gng11 guanine nucleotide binding protein (G protein), gamma 11 2.3219 0.0275
7 ENSMUSG00000094356 Igkv8-28 immunoglobulin kappa variable 8-28 2.3219 0.0275
8 ENSMUSG00000102167 Gm2345 predicted gene 2345 2.3219 0.0000
9 ENSMUSG00000103465 Gm37617 predicted gene, 37617 2.3219 0.0275
10 ENSMUSG00000106742 Gm42474 predicted gene 42474 2.3219 0.0275

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000103089 Gm38118 predicted gene, 38118 -1.5510 0.0000
50853 ENSMUSG00000020973 Dnaaf2 dynein, axonemal assembly factor 2 -1.5502 0.0000
50852 ENSMUSG00000022533 Atp13a3 ATPase type 13A3 -1.5501 0.0000
50851 ENSMUSG00000095139 Pou3f2 POU domain, class 3, transcription factor 2 -1.5472 0.0000
50850 ENSMUSG00000020464 Pnpt1 polyribonucleotide nucleotidyltransferase 1 -1.5467 0.0000
50849 ENSMUSG00000056952 Tatdn2 TatD DNase domain containing 2 -1.5453 0.0000
50848 ENSMUSG00000046352 Gjb2 gap junction protein, beta 2 -1.5451 0.0000
50847 ENSMUSG00000084837 1700108N11Rik RIKEN cDNA 1700108N11 gene -1.5448 0.0000
50846 ENSMUSG00000002688 Prkd1 protein kinase D1 -1.5432 0.0000
50845 ENSMUSG00000103705 4930518J20Rik RIKEN cDNA 4930518J20 gene -1.5397 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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