SHOGoiN Cell Methylome: GSM1370564

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370564


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M34Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.3923 0.0000
2 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.8074 0.0000
3 ENSMUSG00000112081 Gm9004 predicted gene 9004 3.3219 0.0009
4 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.8074 0.0095
5 ENSMUSG00000062524 Ncr1 natural cytotoxicity triggering receptor 1 2.5850 0.0207
6 ENSMUSG00000067276 Capn6 calpain 6 2.5850 0.0207
7 ENSMUSG00000105967 Gm47298 predicted gene, 47298 2.5850 0.0207
8 ENSMUSG00000098666 Mir6950 microRNA 6950 2.4534 0.0009
9 ENSMUSG00000025525 Apool apolipoprotein O-like 2.3219 0.0450
10 ENSMUSG00000062901 Klhl24 kelch-like 24 2.3219 0.0450

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000099673 Scgb2b30 secretoglobin, family 2B, member 30 -1.5850 0.5031
50853 ENSMUSG00000099388 Gm28966 predicted gene 28966 -1.5850 0.5031
50852 ENSMUSG00000098271 Gm27828 predicted gene, 27828 -1.5850 0.5031
50851 ENSMUSG00000097868 A330069E16Rik RIKEN cDNA A330069E16 gene -1.5850 0.5031
50850 ENSMUSG00000097308 Gm6410 predicted gene 6410 -1.5850 0.0000
50849 ENSMUSG00000096920 Rps19-ps8 ribosomal protein S19, pseudogene 8 -1.5850 0.0342
50847 ENSMUSG00000095564 Gm20474 predicted gene 20474 -1.5850 0.0000
50846 ENSMUSG00000095217 Hist1h2bn histone cluster 1, H2bn -1.5850 0.1297
50845 ENSMUSG00000094428 Gm26443 predicted gene, 26443 -1.5850 0.5031
10 ENSMUSG00000062901 Klhl24 kelch-like 24 2.3219 0.0450

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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