Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370564

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370564


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M34Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.3923 0.0000
2 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.8074 0.0000
3 ENSMUSG00000112081 Gm9004 predicted gene 9004 3.3219 0.0009
4 ENSMUSG00000110158 Gm45690 predicted gene 45690 2.8074 0.0095
5 ENSMUSG00000062524 Ncr1 natural cytotoxicity triggering receptor 1 2.5850 0.0207
6 ENSMUSG00000067276 Capn6 calpain 6 2.5850 0.0207
8 ENSMUSG00000098666 Mir6950 microRNA 6950 2.4534 0.0009
9 ENSMUSG00000025525 Apool apolipoprotein O-like 2.3219 0.0450
10 ENSMUSG00000062901 Klhl24 kelch-like 24 2.3219 0.0450
47072 ENSMUSG00000097979 Gm4691 predicted gene 4691 -0.8146 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47080 ENSMUSG00000030967 Zranb1 zinc finger, RAN-binding domain containing 1 -0.8154 0.0000
47079 ENSMUSG00000014859 E2f4 E2F transcription factor 4 -0.8154 0.0000
47078 ENSMUSG00000035666 Gtf3c4 general transcription factor IIIC, polypeptide 4 -0.8154 0.0000
47077 ENSMUSG00000063568 Jazf1 JAZF zinc finger 1 -0.8153 0.0000
47076 ENSMUSG00000109479 Gm44919 predicted gene 44919 -0.8148 0.0000
47075 ENSMUSG00000018293 Pfn1 profilin 1 -0.8147 0.0000
47074 ENSMUSG00000031803 B3gnt3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 -0.8147 0.0000
47073 ENSMUSG00000107873 Gm19065 predicted gene, 19065 -0.8146 0.0000
47072 ENSMUSG00000097979 Gm4691 predicted gene 4691 -0.8146 0.0000
10 ENSMUSG00000062901 Klhl24 kelch-like 24 2.3219 0.0450

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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