SHOGoiN Cell Methylome: GSM1370565
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370565 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M35 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000105290 | Gm43528 | predicted gene 43528 | 4.8580 | 0.0000 |
| 2 | ENSMUSG00000082540 | Vmn1r-ps112 | vomeronasal 1 receptor, pseudogene 112 | 3.8074 | 0.0002 |
| 3 | ENSMUSG00000098114 | Gm26957 | predicted gene, 26957 | 3.5850 | 0.0010 |
| 4 | ENSMUSG00000015405 | Ace2 | angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 | 3.0000 | 0.0156 |
| 5 | ENSMUSG00000103125 | Gm37388 | predicted gene, 37388 | 3.0000 | 0.0156 |
| 6 | ENSMUSG00000104318 | Pcdha7 | protocadherin alpha 7 | 3.0000 | 0.0156 |
| 7 | ENSMUSG00000040254 | Sema3d | sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D | 2.8074 | 0.0005 |
| 8 | ENSMUSG00000040370 | Etfrf1 | electron transfer flavoprotein regulatory factor 1 | 2.7618 | 0.0000 |
| 9 | ENSMUSG00000078932 | CN725425 | cDNA sequence CN725425 | 2.6610 | 0.0001 |
| 10 | ENSMUSG00000109354 | Olfr706 | olfactory receptor 706 | 2.6591 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000098463 | Cphx2 | cytoplasmic polyadenylated homeobox 2 | -1.5850 | 0.2495 |
| 50853 | ENSMUSG00000097679 | Rps19-ps5 | ribosomal protein S19, pseudogene 5 | -1.5850 | 0.2495 |
| 50852 | ENSMUSG00000097110 | Gm26726 | predicted gene, 26726 | -1.5850 | 0.0010 |
| 50850 | ENSMUSG00000095878 | Gm23045 | predicted gene, 23045 | -1.5850 | 0.0155 |
| 50849 | ENSMUSG00000095847 | Gm5451 | predicted gene 5451 | -1.5850 | 0.0000 |
| 50848 | ENSMUSG00000094939 | Gm21773 | predicted gene, 21773 | -1.5850 | 0.2495 |
| 50847 | ENSMUSG00000094817 | Cphx3 | cytoplasmic polyadenylated homeobox 3 | -1.5850 | 0.2495 |
| 50846 | ENSMUSG00000094357 | Gm25570 | predicted gene, 25570 | -1.5850 | 0.2495 |
| 50845 | ENSMUSG00000093509 | Obox3-ps3 | oocyte specific homeobox 3, pseudogene 3 | -1.5850 | 0.2495 |
| 10 | ENSMUSG00000109354 | Olfr706 | olfactory receptor 706 | 2.6591 | 0.0000 |
