SHOGoiN Cell Methylome: GSM1370565
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370565 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M35 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000105290 | Gm43528 | predicted gene 43528 | 4.8580 | 0.0000 |
| 2 | ENSMUSG00000082540 | Vmn1r-ps112 | vomeronasal 1 receptor, pseudogene 112 | 3.8074 | 0.0002 |
| 3 | ENSMUSG00000098114 | Gm26957 | predicted gene, 26957 | 3.5850 | 0.0010 |
| 4 | ENSMUSG00000015405 | Ace2 | angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 | 3.0000 | 0.0156 |
| 5 | ENSMUSG00000103125 | Gm37388 | NA | 3.0000 | 0.0156 |
| 6 | ENSMUSG00000104318 | Pcdha7 | Protocadherin alpha-7 | 3.0000 | 0.0156 |
| 7 | ENSMUSG00000040254 | Sema3d | Semaphorin-3D | 2.8074 | 0.0005 |
| 8 | ENSMUSG00000040370 | Etfrf1 | Electron transfer flavoprotein regulatory factor 1 | 2.7618 | 0.0000 |
| 9 | ENSMUSG00000078932 | CN725425 | cDNA sequence CN725425 | 2.6610 | 0.0001 |
| 10 | ENSMUSG00000109354 | Olfr706 | NA | 2.6591 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000050603 | Olfr1008 | NA | -2.3219 | 0.0623 |
| 50997 | ENSMUSG00000031380 | Vegfd | vascular endothelial growth factor D | -2.3219 | 0.0623 |
| 50996 | ENSMUSG00000101111 | Gm28437 | predicted gene 28437 | -2.2781 | 0.0000 |
| 50995 | ENSMUSG00000101249 | Gm29216 | predicted gene 29216 | -2.2736 | 0.0000 |
| 50994 | ENSMUSG00000102070 | Gm28661 | predicted gene 28661 | -2.2534 | 0.0000 |
| 50993 | ENSMUSG00000068167 | Csnka2ip | Casein kinase II subunit alpha'-interacting protein | -2.2297 | 0.0005 |
| 50992 | ENSMUSG00000016200 | Syt14 | Synaptotagmin-14 | -2.2187 | 0.0000 |
| 50991 | ENSMUSG00000100862 | Gm10925 | predicted gene 10925 | -2.1908 | 0.0000 |
| 50990 | ENSMUSG00000096630 | Vmn2r26 | vomeronasal 2, receptor 26 | -2.1699 | 0.0214 |
| 50989 | ENSMUSG00000100544 | Gm28606 | predicted gene 28606 | -2.1610 | 0.0010 |
