Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM1370565
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370565
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M35
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000105290
Gm43528
predicted gene 43528
4.8580
0.0000
2
ENSMUSG00000082540
Vmn1r-ps112
vomeronasal 1 receptor, pseudogene 112
3.8074
0.0002
3
ENSMUSG00000098114
Gm26957
predicted gene, 26957
3.5850
0.0010
4
ENSMUSG00000015405
Ace2
angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
3.0000
0.0156
5
ENSMUSG00000103125
Gm37388
predicted gene, 37388
3.0000
0.0156
6
ENSMUSG00000104318
Pcdha7
protocadherin alpha 7
3.0000
0.0156
7
ENSMUSG00000040254
Sema3d
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
2.8074
0.0005
8
ENSMUSG00000040370
Etfrf1
electron transfer flavoprotein regulatory factor 1
2.7618
0.0000
9
ENSMUSG00000078932
CN725425
cDNA sequence CN725425
2.6610
0.0001
10
ENSMUSG00000109354
Olfr706
olfactory receptor 706
2.6591
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000097015
Gm26705
predicted gene, 26705
-0.7778
0.0214
47080
ENSMUSG00000093042
Mir3109
microRNA 3109
-0.7778
0.0214
47078
ENSMUSG00000083922
Gm3835
predicted pseudogene 3835
-0.7778
0.0008
47077
ENSMUSG00000082681
Cyp2j7-ps1
cytochrome P450, family 2, subfamily j, polypeptide 7, pseudogene 1
-0.7778
0.0214
47076
ENSMUSG00000079435
Rpl36a
ribosomal protein L36A
-0.7778
0.0007
47075
ENSMUSG00000073932
Olfr641
olfactory receptor 641
-0.7778
0.0007
47074
ENSMUSG00000069301
H2ac11
H2A clustered histone 11
-0.7778
0.0007
47073
ENSMUSG00000069300
H2bc11
H2B clustered histone 11
-0.7778
0.0007
47072
ENSMUSG00000057367
Birc2
baculoviral IAP repeat-containing 2
-0.7778
0.0214
10
ENSMUSG00000109354
Olfr706
olfactory receptor 706
2.6591
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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