Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370565

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1370565 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP041257	SRP041257_M35	Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000105290	Gm43528	predicted gene 43528	4.8580	0.0000
2	ENSMUSG00000082540	Vmn1r-ps112	vomeronasal 1 receptor, pseudogene 112	3.8074	0.0002
3	ENSMUSG00000098114	Gm26957	predicted gene, 26957	3.5850	0.0010
4	ENSMUSG00000015405	Ace2	angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	3.0000	0.0156
5	ENSMUSG00000103125	Gm37388	predicted gene, 37388	3.0000	0.0156
6	ENSMUSG00000104318	Pcdha7	protocadherin alpha 7	3.0000	0.0156
7	ENSMUSG00000040254	Sema3d	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	2.8074	0.0005
8	ENSMUSG00000040370	Etfrf1	electron transfer flavoprotein regulatory factor 1	2.7618	0.0000
9	ENSMUSG00000078932	CN725425	cDNA sequence CN725425	2.6610	0.0001
10	ENSMUSG00000109354	Olfr706	olfactory receptor 706	2.6591	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000097015	Gm26705	predicted gene, 26705	-0.7778	0.0214
47080	ENSMUSG00000093042	Mir3109	microRNA 3109	-0.7778	0.0214
47078	ENSMUSG00000083922	Gm3835	predicted pseudogene 3835	-0.7778	0.0008
47077	ENSMUSG00000082681	Cyp2j7-ps1	cytochrome P450, family 2, subfamily j, polypeptide 7, pseudogene 1	-0.7778	0.0214
47076	ENSMUSG00000079435	Rpl36a	ribosomal protein L36A	-0.7778	0.0007
47075	ENSMUSG00000073932	Olfr641	olfactory receptor 641	-0.7778	0.0007
47074	ENSMUSG00000069301	H2ac11	H2A clustered histone 11	-0.7778	0.0007
47073	ENSMUSG00000069300	H2bc11	H2B clustered histone 11	-0.7778	0.0007
47072	ENSMUSG00000057367	Birc2	baculoviral IAP repeat-containing 2	-0.7778	0.0214
10	ENSMUSG00000109354	Olfr706	olfactory receptor 706	2.6591	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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