Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370565

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370565


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M35Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.8580 0.0000
2 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.8074 0.0002
3 ENSMUSG00000098114 Gm26957 predicted gene, 26957 3.5850 0.0010
4 ENSMUSG00000015405 Ace2 angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 3.0000 0.0156
5 ENSMUSG00000103125 Gm37388 predicted gene, 37388 3.0000 0.0156
6 ENSMUSG00000104318 Pcdha7 protocadherin alpha 7 3.0000 0.0156
7 ENSMUSG00000040254 Sema3d sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D 2.8074 0.0005
8 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 2.7618 0.0000
9 ENSMUSG00000078932 CN725425 cDNA sequence CN725425 2.6610 0.0001
10 ENSMUSG00000109354 Olfr706 olfactory receptor 706 2.6591 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000097015 Gm26705 predicted gene, 26705 -0.7778 0.0214
47080 ENSMUSG00000093042 Mir3109 microRNA 3109 -0.7778 0.0214
47078 ENSMUSG00000083922 Gm3835 predicted pseudogene 3835 -0.7778 0.0008
47077 ENSMUSG00000082681 Cyp2j7-ps1 cytochrome P450, family 2, subfamily j, polypeptide 7, pseudogene 1 -0.7778 0.0214
47076 ENSMUSG00000079435 Rpl36a ribosomal protein L36A -0.7778 0.0007
47075 ENSMUSG00000073932 Olfr641 olfactory receptor 641 -0.7778 0.0007
47074 ENSMUSG00000069301 H2ac11 H2A clustered histone 11 -0.7778 0.0007
47073 ENSMUSG00000069300 H2bc11 H2B clustered histone 11 -0.7778 0.0007
47072 ENSMUSG00000057367 Birc2 baculoviral IAP repeat-containing 2 -0.7778 0.0214
10 ENSMUSG00000109354 Olfr706 olfactory receptor 706 2.6591 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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