Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1370566
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370566
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M36
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000069390
Olfr707
olfactory receptor 707
4.8074
0.0000
2
ENSMUSG00000109354
Olfr706
olfactory receptor 706
4.8074
0.0000
3
ENSMUSG00000109539
Gm44667
predicted gene 44667
4.6439
0.0000
4
ENSMUSG00000112452
Gm48075
predicted gene, 48075
4.6439
0.0000
5
ENSMUSG00000020191
Spata48
spermatogenesis associated 48
4.3923
0.0000
6
ENSMUSG00000072964
Bhlhb9
basic helix-loop-helix domain containing, class B9
4.1699
0.0000
7
ENSMUSG00000015405
Ace2
angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
3.3219
0.0019
8
ENSMUSG00000098299
Mir7224
microRNA 7224
3.3219
0.0019
9
ENSMUSG00000102569
Gm37041
predicted gene, 37041
3.1699
0.0000
10
ENSMUSG00000055782
Abcd2
ATP-binding cassette, sub-family D (ALD), member 2
3.1427
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000026208
Des
desmin
-0.8113
0.0000
47080
ENSMUSG00000038037
Socs1
suppressor of cytokine signaling 1
-0.8113
0.0000
47079
ENSMUSG00000026942
Traf2
TNF receptor-associated factor 2
-0.8108
0.0000
47078
ENSMUSG00000023067
Cdkn1a
cyclin-dependent kinase inhibitor 1A (P21)
-0.8101
0.0000
47077
ENSMUSG00000001666
Ddt
D-dopachrome tautomerase
-0.8099
0.0000
47076
ENSMUSG00000105810
Gm43435
predicted gene 43435
-0.8095
0.0002
47075
ENSMUSG00000088185
Scarna2
small Cajal body-specific RNA 2
-0.8095
0.0002
47074
ENSMUSG00000070858
Gm1673
predicted gene 1673
-0.8095
0.0002
47073
ENSMUSG00000025969
Nrp2
neuropilin 2
-0.8095
0.0005
47072
ENSMUSG00000025377
Tepsin
TEPSIN, adaptor related protein complex 4 accessory protein
-0.8095
0.0002
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...