Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370567

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370567


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M37Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.8074 0.0000
2 ENSMUSG00000103384 Gm37753 predicted gene, 37753 3.5850 0.0000
3 ENSMUSG00000103707 Pcdha6 protocadherin alpha 6 3.5850 0.0000
4 ENSMUSG00000100315 1700031P21Rik RIKEN cDNA 1700031P21 gene 3.0000 0.0000
5 ENSMUSG00000053678 Defb40 defensin beta 40 2.8774 0.0000
6 ENSMUSG00000064570 Gm25800 predicted gene, 25800 2.8074 0.0044
7 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.8074 0.0044
8 ENSMUSG00000103625 Gm37357 predicted gene, 37357 2.8074 0.0044
9 ENSMUSG00000109539 Gm44667 predicted gene 44667 2.6240 0.0000
47072 ENSMUSG00000059027 9630013D21Rik RIKEN cDNA 9630013D21 gene -1.0000 0.0014

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000059763 Taar2 trace amine-associated receptor 2 -1.0000 1.0000
47080 ENSMUSG00000059687 Olfr108 olfactory receptor 108 -1.0000 1.0000
47079 ENSMUSG00000059639 Clec4a4 C-type lectin domain family 4, member a4 -1.0000 1.0000
47078 ENSMUSG00000059410 Tas2r125 taste receptor, type 2, member 125 -1.0000 1.0000
47077 ENSMUSG00000059383 Gfral GDNF family receptor alpha like -1.0000 1.0000
47076 ENSMUSG00000059366 Olfr959 olfactory receptor 959 -1.0000 1.0000
47075 ENSMUSG00000059352 Gm10064 predicted gene 10064 -1.0000 1.0000
47074 ENSMUSG00000059237 Ppp1r2-ps4 protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 4 -1.0000 0.0877
47073 ENSMUSG00000059218 Pramel26 PRAME like 26 -1.0000 1.0000
47072 ENSMUSG00000059027 9630013D21Rik RIKEN cDNA 9630013D21 gene -1.0000 0.0014

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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