SHOGoiN Cell Methylome: GSM1370567

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370567


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M37Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.8074 0.0000
2 ENSMUSG00000103384 Gm37753 predicted gene, 37753 3.5850 0.0000
3 ENSMUSG00000103707 Pcdha6 protocadherin alpha 6 3.5850 0.0000
4 ENSMUSG00000100315 1700031P21Rik RIKEN cDNA 1700031P21 gene 3.0000 0.0000
5 ENSMUSG00000053678 Defb40 defensin beta 40 2.8774 0.0000
6 ENSMUSG00000064570 Gm25800 predicted gene, 25800 2.8074 0.0044
7 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 2.8074 0.0044
8 ENSMUSG00000103625 Gm37357 predicted gene, 37357 2.8074 0.0044
9 ENSMUSG00000109539 Gm44667 predicted gene 44667 2.6240 0.0000
10 ENSMUSG00000065253 Gm23970 predicted gene, 23970 2.5850 0.0109

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000102943 Gm37550 predicted gene, 37550 -1.5850 0.0877
50853 ENSMUSG00000102903 Trbv11 T cell receptor beta variable 11 -1.5850 0.5179
50852 ENSMUSG00000102251 Gm37654 predicted gene, 37654 -1.5850 0.5179
50851 ENSMUSG00000102115 Gm28766 predicted gene 28766 -1.5850 0.5179
50850 ENSMUSG00000101910 Gm28691 predicted gene 28691 -1.5850 0.5179
50849 ENSMUSG00000101902 Gm29115 predicted gene 29115 -1.5850 0.1521
50848 ENSMUSG00000101576 Gm20915 predicted gene, 20915 -1.5850 0.5179
50847 ENSMUSG00000101353 Gm29203 predicted gene 29203 -1.5850 0.5179
50846 ENSMUSG00000101321 Gm28817 predicted gene 28817 -1.5850 0.5179
50845 ENSMUSG00000100961 Gm28394 predicted gene 28394 -1.5850 0.5179

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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