Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370568

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370568


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M38Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 5.2479 0.0000
2 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 3.0000 0.0048
3 ENSMUSG00000111982 Gm35135 predicted gene, 35135 2.5850 0.0005
4 ENSMUSG00000084441 Gm26255 predicted gene, 26255 2.3219 0.0473
5 ENSMUSG00000095331 Ptma-ps1 prothymosin alpha, pseudogene 1 2.3219 0.0473
6 ENSMUSG00000104152 Ighv10-4 immunoglobulin heavy variable V10-4 2.3219 0.0473
7 ENSMUSG00000110999 Olfr1075-ps1 olfactory receptor 1075, pseudogene 1 2.3219 0.0022
8 ENSMUSG00000105290 Gm43528 predicted gene 43528 2.1699 0.0153
9 ENSMUSG00000069390 Olfr707 olfactory receptor 707 2.0620 0.0000
10 ENSMUSG00000091028 Gm10722 predicted gene 10722 2.0026 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000065258 Gm23969 predicted gene, 23969 -0.7838 0.0000
47080 ENSMUSG00000027894 Slc6a17 solute carrier family 6 (neurotransmitter transporter), member 17 -0.7837 0.0000
47079 ENSMUSG00000097766 5730420D15Rik RIKEN cDNA 5730420D15 gene -0.7837 0.0000
47078 ENSMUSG00000099622 Gm29188 predicted gene 29188 -0.7837 0.0201
47077 ENSMUSG00000002992 Apoc2 apolipoprotein C-II -0.7835 0.0000
47076 ENSMUSG00000033629 Hacd3 3-hydroxyacyl-CoA dehydratase 3 -0.7835 0.0000
47075 ENSMUSG00000065555 Mir219a-1 microRNA 219a-1 -0.7833 0.0000
47074 ENSMUSG00000040713 Creg1 cellular repressor of E1A-stimulated genes 1 -0.7831 0.0000
47073 ENSMUSG00000084128 Esrp2 epithelial splicing regulatory protein 2 -0.7830 0.0000
47072 ENSMUSG00000021359 Tfap2a transcription factor AP-2, alpha -0.7829 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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