Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1370569
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370569
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M39
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000069390
Olfr707
olfactory receptor 707
6.2668
0.0000
2
ENSMUSG00000101242
Gm28319
predicted gene 28319
4.5850
0.0000
3
ENSMUSG00000105290
Gm43528
predicted gene 43528
4.3219
0.0000
4
ENSMUSG00000084441
Gm26255
predicted gene, 26255
3.7004
0.0000
5
ENSMUSG00000101818
Gm28269
predicted gene 28269
3.5850
0.0001
6
ENSMUSG00000104152
Ighv10-4
immunoglobulin heavy variable V10-4
3.3219
0.0005
7
ENSMUSG00000108303
Gm39075
predicted gene, 39075
3.1699
0.0013
8
ENSMUSG00000112613
Gm48175
predicted gene, 48175
3.1699
0.0013
9
ENSMUSG00000093385
A330044P14Rik
RIKEN cDNA A330044P14 gene
3.0000
0.0029
10
ENSMUSG00000108262
Gm43867
predicted gene, 43867
3.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000039231
Suv39h1
suppressor of variegation 3-9 1
-1.0000
0.0735
47080
ENSMUSG00000039016
Timm8b
translocase of inner mitochondrial membrane 8B
-1.0000
1.0000
47079
ENSMUSG00000038827
Abitram
actin binding transcription modulator
-1.0000
0.0000
47078
ENSMUSG00000038760
Trhr
thyrotropin releasing hormone receptor
-1.0000
0.2631
47077
ENSMUSG00000038736
Nudcd1
NudC domain containing 1
-1.0000
0.0018
47076
ENSMUSG00000038612
Mcl1
myeloid cell leukemia sequence 1
-1.0000
0.0215
47075
ENSMUSG00000038602
Slc35f1
solute carrier family 35, member F1
-1.0000
1.0000
47074
ENSMUSG00000038525
Armc10
armadillo repeat containing 10
-1.0000
0.0035
47073
ENSMUSG00000038462
Uqcrfs1
ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1
-1.0000
0.0118
47072
ENSMUSG00000038451
Spsb2
splA/ryanodine receptor domain and SOCS box containing 2
-1.0000
0.0010
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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