Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1370570
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370570
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M40
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000102569
Gm37041
predicted gene, 37041
4.7549
0.0000
2
ENSMUSG00000105290
Gm43528
predicted gene 43528
4.4594
0.0000
3
ENSMUSG00000095737
Igkv11-125
immunoglobulin kappa variable 11-125
3.1699
0.0006
4
ENSMUSG00000102134
Gm9931
predicted gene 9931
3.1699
0.0006
5
ENSMUSG00000031712
Il15
interleukin 15
3.0000
0.0016
6
ENSMUSG00000082540
Vmn1r-ps112
vomeronasal 1 receptor, pseudogene 112
2.9290
0.0000
7
ENSMUSG00000069014
Gm5641
predicted gene 5641
2.8074
0.0039
8
ENSMUSG00000088362
Gm23498
predicted gene, 23498
2.8074
0.0039
9
ENSMUSG00000084441
Gm26255
predicted gene, 26255
2.6240
0.0000
10
ENSMUSG00000081731
Calr-ps
calreticulin, pseudogene
2.5850
0.0099
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000025591
Tma16
translation machinery associated 16
-0.9686
0.0000
47080
ENSMUSG00000085696
Hoxaas3
Hoxa cluster antisense RNA 3
-0.9686
0.0000
47079
ENSMUSG00000107839
4930434O05Rik
RIKEN cDNA 4930434O05 gene
-0.9684
0.0000
47078
ENSMUSG00000089432
Mir1966
microRNA 1966
-0.9682
0.0000
47077
ENSMUSG00000109712
Gm8667
predicted gene 8667
-0.9681
0.0058
47076
ENSMUSG00000020719
Ddx5
DEAD box helicase 5
-0.9679
0.0000
47075
ENSMUSG00000031858
Mau2
MAU2 sister chromatid cohesion factor
-0.9677
0.0000
47074
ENSMUSG00000029249
Rest
RE1-silencing transcription factor
-0.9674
0.0000
47073
ENSMUSG00000015957
Wnt11
wingless-type MMTV integration site family, member 11
-0.9674
0.0000
47072
ENSMUSG00000084459
Gm24598
predicted gene, 24598
-0.9673
0.0092
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...