Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370570

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1370570 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP041257	SRP041257_M40	Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000102569	Gm37041	predicted gene, 37041	4.7549	0.0000
2	ENSMUSG00000105290	Gm43528	predicted gene 43528	4.4594	0.0000
3	ENSMUSG00000095737	Igkv11-125	immunoglobulin kappa variable 11-125	3.1699	0.0006
4	ENSMUSG00000102134	Gm9931	predicted gene 9931	3.1699	0.0006
5	ENSMUSG00000031712	Il15	interleukin 15	3.0000	0.0016
6	ENSMUSG00000082540	Vmn1r-ps112	vomeronasal 1 receptor, pseudogene 112	2.9290	0.0000
7	ENSMUSG00000069014	Gm5641	predicted gene 5641	2.8074	0.0039
8	ENSMUSG00000088362	Gm23498	predicted gene, 23498	2.8074	0.0039
9	ENSMUSG00000084441	Gm26255	predicted gene, 26255	2.6240	0.0000
10	ENSMUSG00000081731	Calr-ps	calreticulin, pseudogene	2.5850	0.0099

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000025591	Tma16	translation machinery associated 16	-0.9686	0.0000
47080	ENSMUSG00000085696	Hoxaas3	Hoxa cluster antisense RNA 3	-0.9686	0.0000
47079	ENSMUSG00000107839	4930434O05Rik	RIKEN cDNA 4930434O05 gene	-0.9684	0.0000
47078	ENSMUSG00000089432	Mir1966	microRNA 1966	-0.9682	0.0000
47077	ENSMUSG00000109712	Gm8667	predicted gene 8667	-0.9681	0.0058
47076	ENSMUSG00000020719	Ddx5	DEAD box helicase 5	-0.9679	0.0000
47075	ENSMUSG00000031858	Mau2	MAU2 sister chromatid cohesion factor	-0.9677	0.0000
47074	ENSMUSG00000029249	Rest	RE1-silencing transcription factor	-0.9674	0.0000
47073	ENSMUSG00000015957	Wnt11	wingless-type MMTV integration site family, member 11	-0.9674	0.0000
47072	ENSMUSG00000084459	Gm24598	predicted gene, 24598	-0.9673	0.0092

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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