SHOGoiN Cell Methylome: GSM1370570
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370570 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M40 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000102569 | Gm37041 | predicted gene, 37041 | 4.7549 | 0.0000 |
| 2 | ENSMUSG00000105290 | Gm43528 | predicted gene 43528 | 4.4594 | 0.0000 |
| 3 | ENSMUSG00000095737 | Igkv11-125 | NA | 3.1699 | 0.0006 |
| 4 | ENSMUSG00000102134 | Gm9931 | NA | 3.1699 | 0.0006 |
| 5 | ENSMUSG00000031712 | Il15 | Interleukin-15 | 3.0000 | 0.0016 |
| 6 | ENSMUSG00000082540 | Vmn1r-ps112 | vomeronasal 1 receptor, pseudogene 112 | 2.9290 | 0.0000 |
| 7 | ENSMUSG00000069014 | Gm5641 | predicted gene 5641 | 2.8074 | 0.0039 |
| 8 | ENSMUSG00000088362 | Gm23498 | predicted gene, 23498 | 2.8074 | 0.0039 |
| 9 | ENSMUSG00000084441 | Gm26255 | predicted gene, 26255 | 2.6240 | 0.0000 |
| 10 | ENSMUSG00000081731 | Calr-ps | calreticulin, pseudogene | 2.5850 | 0.0099 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000110609 | Gm7948 | predicted gene 7948 | -1.5850 | 0.5211 |
| 50997 | ENSMUSG00000109220 | Gm30196 | predicted gene, 30196 | -1.5850 | 0.5211 |
| 50996 | ENSMUSG00000108427 | Gm36696 | predicted gene, 36696 | -1.5850 | 0.5211 |
| 50995 | ENSMUSG00000106858 | Gm43844 | predicted gene 43844 | -1.5850 | 0.1569 |
| 50994 | ENSMUSG00000106259 | Trav11n | T cell receptor alpha variable 11N | -1.5850 | 0.5211 |
| 50993 | ENSMUSG00000106027 | Mir669a-7 | microRNA 669a-7 | -1.5850 | 0.1569 |
| 50992 | ENSMUSG00000105734 | 4930558C23Rik | RIKEN cDNA 4930558C23 gene | -1.5850 | 0.5211 |
| 50991 | ENSMUSG00000105680 | Gm18340 | predicted gene, 18340 | -1.5850 | 0.5211 |
| 50990 | ENSMUSG00000105330 | Mir669a-6 | microRNA 669a-6 | -1.5850 | 0.1569 |
| 50989 | ENSMUSG00000104652 | Mir669a-8 | microRNA 669a-8 | -1.5850 | 0.1569 |
