Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370570

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370570


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M40Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000102569 Gm37041 predicted gene, 37041 4.7549 0.0000
2 ENSMUSG00000105290 Gm43528 predicted gene 43528 4.4594 0.0000
3 ENSMUSG00000095737 Igkv11-125 immunoglobulin kappa variable 11-125 3.1699 0.0006
4 ENSMUSG00000102134 Gm9931 predicted gene 9931 3.1699 0.0006
5 ENSMUSG00000031712 Il15 interleukin 15 3.0000 0.0016
6 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 2.9290 0.0000
7 ENSMUSG00000069014 Gm5641 predicted gene 5641 2.8074 0.0039
8 ENSMUSG00000088362 Gm23498 predicted gene, 23498 2.8074 0.0039
9 ENSMUSG00000084441 Gm26255 predicted gene, 26255 2.6240 0.0000
10 ENSMUSG00000081731 Calr-ps calreticulin, pseudogene 2.5850 0.0099

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000025591 Tma16 translation machinery associated 16 -0.9686 0.0000
47080 ENSMUSG00000085696 Hoxaas3 Hoxa cluster antisense RNA 3 -0.9686 0.0000
47079 ENSMUSG00000107839 4930434O05Rik RIKEN cDNA 4930434O05 gene -0.9684 0.0000
47078 ENSMUSG00000089432 Mir1966 microRNA 1966 -0.9682 0.0000
47077 ENSMUSG00000109712 Gm8667 predicted gene 8667 -0.9681 0.0058
47076 ENSMUSG00000020719 Ddx5 DEAD box helicase 5 -0.9679 0.0000
47075 ENSMUSG00000031858 Mau2 MAU2 sister chromatid cohesion factor -0.9677 0.0000
47074 ENSMUSG00000029249 Rest RE1-silencing transcription factor -0.9674 0.0000
47073 ENSMUSG00000015957 Wnt11 wingless-type MMTV integration site family, member 11 -0.9674 0.0000
47072 ENSMUSG00000084459 Gm24598 predicted gene, 24598 -0.9673 0.0092

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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