SHOGoiN Cell Methylome: GSM1370570
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370570 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M40 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000102569 | Gm37041 | predicted gene, 37041 | 4.7549 | 0.0000 |
| 2 | ENSMUSG00000105290 | Gm43528 | predicted gene 43528 | 4.4594 | 0.0000 |
| 3 | ENSMUSG00000095737 | Igkv11-125 | immunoglobulin kappa variable 11-125 | 3.1699 | 0.0006 |
| 4 | ENSMUSG00000102134 | Gm9931 | predicted gene 9931 | 3.1699 | 0.0006 |
| 5 | ENSMUSG00000031712 | Il15 | interleukin 15 | 3.0000 | 0.0016 |
| 6 | ENSMUSG00000082540 | Vmn1r-ps112 | vomeronasal 1 receptor, pseudogene 112 | 2.9290 | 0.0000 |
| 7 | ENSMUSG00000069014 | Gm5641 | predicted gene 5641 | 2.8074 | 0.0039 |
| 8 | ENSMUSG00000088362 | Gm23498 | predicted gene, 23498 | 2.8074 | 0.0039 |
| 9 | ENSMUSG00000084441 | Gm26255 | predicted gene, 26255 | 2.6240 | 0.0000 |
| 10 | ENSMUSG00000081731 | Calr-ps | calreticulin, pseudogene | 2.5850 | 0.0099 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000093919 | Gm20760 | predicted gene, 20760 | -1.5525 | 0.0000 |
| 50853 | ENSMUSG00000108391 | Gm9768 | predicted gene 9768 | -1.5514 | 0.0000 |
| 50852 | ENSMUSG00000037266 | Rsrp1 | arginine/serine rich protein 1 | -1.5509 | 0.0000 |
| 50851 | ENSMUSG00000022533 | Atp13a3 | ATPase type 13A3 | -1.5494 | 0.0000 |
| 50850 | ENSMUSG00000022299 | Slc25a32 | solute carrier family 25, member 32 | -1.5483 | 0.0000 |
| 50849 | ENSMUSG00000084950 | Gm5577 | predicted gene 5577 | -1.5478 | 0.0000 |
| 50848 | ENSMUSG00000022300 | Dcaf13 | DDB1 and CUL4 associated factor 13 | -1.5476 | 0.0000 |
| 50847 | ENSMUSG00000106591 | Gm47286 | predicted gene, 47286 | -1.5451 | 0.0000 |
| 50846 | ENSMUSG00000103051 | Gm7871 | predicted gene 7871 | -1.5425 | 0.0141 |
| 50845 | ENSMUSG00000047694 | Yipf6 | Yip1 domain family, member 6 | -1.5414 | 0.0000 |
