SHOGoiN Cell Methylome: GSM1370571
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370571 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M41 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000109354 | Olfr706 | NA | 5.5749 | 0.0000 |
| 2 | ENSMUSG00000082540 | Vmn1r-ps112 | vomeronasal 1 receptor, pseudogene 112 | 4.7004 | 0.0000 |
| 3 | ENSMUSG00000101818 | Gm28269 | NA | 4.3219 | 0.0000 |
| 4 | ENSMUSG00000107194 | Gm43173 | predicted gene 43173 | 4.1699 | 0.0000 |
| 5 | ENSMUSG00000107374 | Gm43172 | predicted gene 43172 | 4.1699 | 0.0000 |
| 6 | ENSMUSG00000084441 | Gm26255 | predicted gene, 26255 | 4.0000 | 0.0001 |
| 7 | ENSMUSG00000020226 | Slc5a4b | solute carrier family 5 (neutral amino acid transporters, system A), member 4b | 3.5850 | 0.0011 |
| 8 | ENSMUSG00000086540 | Scml1 | Scm polycomb group protein like 1 | 3.4594 | 0.0022 |
| 9 | ENSMUSG00000061809 | Tbpl2 | TATA box-binding protein-like protein 2 | 3.3219 | 0.0043 |
| 10 | ENSMUSG00000090449 | Gm17076 | predicted gene 17076 | 3.3219 | 0.0043 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000024878 | Cbwd1 | COBW domain-containing protein 1 | -1.9585 | 0.0000 |
| 50997 | ENSMUSG00000028669 | Pithd1 | PITH domain-containing protein 1 | -1.9495 | 0.0000 |
| 50996 | ENSMUSG00000097370 | 4930467K11Rik | RIKEN cDNA 4930467K11 gene | -1.9222 | 0.0000 |
| 50995 | ENSMUSG00000088349 | Gm22335 | predicted gene, 22335 | -1.9117 | 0.0000 |
| 50994 | ENSMUSG00000101456 | Gm29043 | predicted gene 29043 | -1.9037 | 0.0054 |
| 50993 | ENSMUSG00000100243 | Gm28367 | predicted gene 28367 | -1.9037 | 0.0054 |
| 50992 | ENSMUSG00000021713 | Ppwd1 | Peptidylprolyl isomerase domain and WD repeat-containing protein 1 | -1.9000 | 0.0000 |
| 50991 | ENSMUSG00000024991 | Eif3a | Eukaryotic translation initiation factor 3 subunit A | -1.8923 | 0.0000 |
| 50990 | ENSMUSG00000100131 | Gm28439 | predicted gene 28439 | -1.8624 | 0.0000 |
| 50989 | ENSMUSG00000063320 | 1190007I07Rik | RIKEN cDNA 1190007I07 gene | -1.8530 | 0.0000 |
