Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1370571
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370571
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M41
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000109354
Olfr706
olfactory receptor 706
5.5749
0.0000
2
ENSMUSG00000082540
Vmn1r-ps112
vomeronasal 1 receptor, pseudogene 112
4.7004
0.0000
3
ENSMUSG00000101818
Gm28269
predicted gene 28269
4.3219
0.0000
4
ENSMUSG00000107194
Gm43173
predicted gene 43173
4.1699
0.0000
5
ENSMUSG00000107374
Gm43172
predicted gene 43172
4.1699
0.0000
6
ENSMUSG00000084441
Gm26255
predicted gene, 26255
4.0000
0.0001
7
ENSMUSG00000020226
Slc5a4b
solute carrier family 5 (neutral amino acid transporters, system A), member 4b
3.5850
0.0011
8
ENSMUSG00000086540
Scml1
Scm polycomb group protein like 1
3.4594
0.0022
9
ENSMUSG00000061809
Tbpl2
TATA box binding protein like 2
3.3219
0.0043
10
ENSMUSG00000090449
Gm17076
predicted gene 17076
3.3219
0.0043
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
50600
ENSMUSG00000041115
Iqsec2
IQ motif and Sec7 domain 2
-1.3045
0.0000
50599
ENSMUSG00000075514
Gm13375
predicted gene 13375
-1.3045
0.0000
50598
ENSMUSG00000103009
Gm4430
predicted gene 4430
-1.3044
0.0000
50597
ENSMUSG00000108738
Gm44777
predicted gene 44777
-1.3040
0.0000
50596
ENSMUSG00000107601
Gm2651
predicted gene 2651
-1.3034
0.0000
50595
ENSMUSG00000035051
Dhx57
DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
-1.3027
0.0000
50594
ENSMUSG00000026500
Cox20
cytochrome c oxidase assembly protein 20
-1.3026
0.0000
50593
ENSMUSG00000015214
Mtmr1
myotubularin related protein 1
-1.3019
0.0000
50592
ENSMUSG00000111605
4632418H02Rik
RIKEN cDNA 4632418H02 gene
-1.3018
0.0000
50591
ENSMUSG00000097622
A330033J07Rik
RIKEN cDNA A330033J07 gene
-1.3013
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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