SHOGoiN Cell Methylome: GSM1370571

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370571


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M41Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 5.5749 0.0000
2 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 4.7004 0.0000
3 ENSMUSG00000101818 Gm28269 predicted gene 28269 4.3219 0.0000
4 ENSMUSG00000107194 Gm43173 predicted gene 43173 4.1699 0.0000
5 ENSMUSG00000107374 Gm43172 predicted gene 43172 4.1699 0.0000
6 ENSMUSG00000084441 Gm26255 predicted gene, 26255 4.0000 0.0001
7 ENSMUSG00000020226 Slc5a4b solute carrier family 5 (neutral amino acid transporters, system A), member 4b 3.5850 0.0011
8 ENSMUSG00000086540 Scml1 Scm polycomb group protein like 1 3.4594 0.0022
9 ENSMUSG00000061809 Tbpl2 TATA box binding protein like 2 3.3219 0.0043
10 ENSMUSG00000090449 Gm17076 predicted gene 17076 3.3219 0.0043

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000065298 Gm26121 predicted gene, 26121 -1.5850 0.2254
50853 ENSMUSG00000065164 Gm23814 predicted gene, 23814 -1.5850 0.2254
50852 ENSMUSG00000061607 Mdc1 mediator of DNA damage checkpoint 1 -1.5850 0.0026
50851 ENSMUSG00000059504 Olfr314 olfactory receptor 314 -1.5850 0.2254
50850 ENSMUSG00000058706 0610030E20Rik RIKEN cDNA 0610030E20 gene -1.5850 0.0000
50849 ENSMUSG00000057981 Vmn1r12 vomeronasal 1 receptor 12 -1.5850 0.2254
50848 ENSMUSG00000056959 Olfr315 olfactory receptor 315 -1.5850 0.2254
50847 ENSMUSG00000056383 AI987944 expressed sequence AI987944 -1.5850 0.2254
50846 ENSMUSG00000052595 A1cf APOBEC1 complementation factor -1.5850 0.2254
50845 ENSMUSG00000051116 Gm8121 predicted pseudogene 8121 -1.5850 0.2254

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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