Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370571

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1370571 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP041257	SRP041257_M41	Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (WGBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000109354	Olfr706	olfactory receptor 706	5.5749	0.0000
2	ENSMUSG00000082540	Vmn1r-ps112	vomeronasal 1 receptor, pseudogene 112	4.7004	0.0000
3	ENSMUSG00000101818	Gm28269	predicted gene 28269	4.3219	0.0000
4	ENSMUSG00000107194	Gm43173	predicted gene 43173	4.1699	0.0000
5	ENSMUSG00000107374	Gm43172	predicted gene 43172	4.1699	0.0000
6	ENSMUSG00000084441	Gm26255	predicted gene, 26255	4.0000	0.0001
7	ENSMUSG00000020226	Slc5a4b	solute carrier family 5 (neutral amino acid transporters, system A), member 4b	3.5850	0.0011
8	ENSMUSG00000086540	Scml1	Scm polycomb group protein like 1	3.4594	0.0022
9	ENSMUSG00000061809	Tbpl2	TATA box binding protein like 2	3.3219	0.0043
10	ENSMUSG00000090449	Gm17076	predicted gene 17076	3.3219	0.0043

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
50600	ENSMUSG00000041115	Iqsec2	IQ motif and Sec7 domain 2	-1.3045	0.0000
50599	ENSMUSG00000075514	Gm13375	predicted gene 13375	-1.3045	0.0000
50598	ENSMUSG00000103009	Gm4430	predicted gene 4430	-1.3044	0.0000
50597	ENSMUSG00000108738	Gm44777	predicted gene 44777	-1.3040	0.0000
50596	ENSMUSG00000107601	Gm2651	predicted gene 2651	-1.3034	0.0000
50595	ENSMUSG00000035051	Dhx57	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	-1.3027	0.0000
50594	ENSMUSG00000026500	Cox20	cytochrome c oxidase assembly protein 20	-1.3026	0.0000
50593	ENSMUSG00000015214	Mtmr1	myotubularin related protein 1	-1.3019	0.0000
50592	ENSMUSG00000111605	4632418H02Rik	RIKEN cDNA 4632418H02 gene	-1.3018	0.0000
50591	ENSMUSG00000097622	A330033J07Rik	RIKEN cDNA A330033J07 gene	-1.3013	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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