SHOGoiN Cell Methylome: GSM1370571
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370571 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M41 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000109354 | Olfr706 | olfactory receptor 706 | 5.5749 | 0.0000 |
| 2 | ENSMUSG00000082540 | Vmn1r-ps112 | vomeronasal 1 receptor, pseudogene 112 | 4.7004 | 0.0000 |
| 3 | ENSMUSG00000101818 | Gm28269 | predicted gene 28269 | 4.3219 | 0.0000 |
| 4 | ENSMUSG00000107194 | Gm43173 | predicted gene 43173 | 4.1699 | 0.0000 |
| 5 | ENSMUSG00000107374 | Gm43172 | predicted gene 43172 | 4.1699 | 0.0000 |
| 6 | ENSMUSG00000084441 | Gm26255 | predicted gene, 26255 | 4.0000 | 0.0001 |
| 7 | ENSMUSG00000020226 | Slc5a4b | solute carrier family 5 (neutral amino acid transporters, system A), member 4b | 3.5850 | 0.0011 |
| 8 | ENSMUSG00000086540 | Scml1 | Scm polycomb group protein like 1 | 3.4594 | 0.0022 |
| 9 | ENSMUSG00000061809 | Tbpl2 | TATA box binding protein like 2 | 3.3219 | 0.0043 |
| 10 | ENSMUSG00000090449 | Gm17076 | predicted gene 17076 | 3.3219 | 0.0043 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000065298 | Gm26121 | predicted gene, 26121 | -1.5850 | 0.2254 |
| 50853 | ENSMUSG00000065164 | Gm23814 | predicted gene, 23814 | -1.5850 | 0.2254 |
| 50852 | ENSMUSG00000061607 | Mdc1 | mediator of DNA damage checkpoint 1 | -1.5850 | 0.0026 |
| 50851 | ENSMUSG00000059504 | Olfr314 | olfactory receptor 314 | -1.5850 | 0.2254 |
| 50850 | ENSMUSG00000058706 | 0610030E20Rik | RIKEN cDNA 0610030E20 gene | -1.5850 | 0.0000 |
| 50849 | ENSMUSG00000057981 | Vmn1r12 | vomeronasal 1 receptor 12 | -1.5850 | 0.2254 |
| 50848 | ENSMUSG00000056959 | Olfr315 | olfactory receptor 315 | -1.5850 | 0.2254 |
| 50847 | ENSMUSG00000056383 | AI987944 | expressed sequence AI987944 | -1.5850 | 0.2254 |
| 50846 | ENSMUSG00000052595 | A1cf | APOBEC1 complementation factor | -1.5850 | 0.2254 |
| 50845 | ENSMUSG00000051116 | Gm8121 | predicted pseudogene 8121 | -1.5850 | 0.2254 |
