Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370571

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370571


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M41Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109354 Olfr706 olfactory receptor 706 5.5749 0.0000
2 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 4.7004 0.0000
3 ENSMUSG00000101818 Gm28269 predicted gene 28269 4.3219 0.0000
4 ENSMUSG00000107194 Gm43173 predicted gene 43173 4.1699 0.0000
5 ENSMUSG00000107374 Gm43172 predicted gene 43172 4.1699 0.0000
6 ENSMUSG00000084441 Gm26255 predicted gene, 26255 4.0000 0.0001
7 ENSMUSG00000020226 Slc5a4b solute carrier family 5 (neutral amino acid transporters, system A), member 4b 3.5850 0.0011
8 ENSMUSG00000086540 Scml1 Scm polycomb group protein like 1 3.4594 0.0022
9 ENSMUSG00000061809 Tbpl2 TATA box binding protein like 2 3.3219 0.0043
10 ENSMUSG00000090449 Gm17076 predicted gene 17076 3.3219 0.0043

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000041115 Iqsec2 IQ motif and Sec7 domain 2 -1.3045 0.0000
50599 ENSMUSG00000075514 Gm13375 predicted gene 13375 -1.3045 0.0000
50598 ENSMUSG00000103009 Gm4430 predicted gene 4430 -1.3044 0.0000
50597 ENSMUSG00000108738 Gm44777 predicted gene 44777 -1.3040 0.0000
50596 ENSMUSG00000107601 Gm2651 predicted gene 2651 -1.3034 0.0000
50595 ENSMUSG00000035051 Dhx57 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 -1.3027 0.0000
50594 ENSMUSG00000026500 Cox20 cytochrome c oxidase assembly protein 20 -1.3026 0.0000
50593 ENSMUSG00000015214 Mtmr1 myotubularin related protein 1 -1.3019 0.0000
50592 ENSMUSG00000111605 4632418H02Rik RIKEN cDNA 4632418H02 gene -1.3018 0.0000
50591 ENSMUSG00000097622 A330033J07Rik RIKEN cDNA A330033J07 gene -1.3013 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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