Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1370572
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370572
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M42
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000069390
Olfr707
olfactory receptor 707
5.9887
0.0000
2
ENSMUSG00000109539
Gm44667
predicted gene 44667
5.7549
0.0000
3
ENSMUSG00000047419
Cmya5
cardiomyopathy associated 5
4.5850
0.0000
4
ENSMUSG00000102569
Gm37041
predicted gene, 37041
4.0875
0.0000
5
ENSMUSG00000109354
Olfr706
olfactory receptor 706
3.7868
0.0000
6
ENSMUSG00000075137
Olfr1163
olfactory receptor 1163
3.5850
0.0003
7
ENSMUSG00000089678
Agxt2
alanine-glyoxylate aminotransferase 2
3.5850
0.0003
8
ENSMUSG00000103465
Gm37617
predicted gene, 37617
3.3219
0.0014
9
ENSMUSG00000110158
Gm45690
predicted gene 45690
3.3219
0.0014
10
ENSMUSG00000082886
Gm5386
predicted pseudogene 5386
3.1699
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000030877
Mfsd13b
major facilitator superfamily domain containing 13B
-0.8097
0.0000
47079
ENSMUSG00000097564
C430014B12Rik
RIKEN cDNA C430014B12 gene
-0.8095
0.0000
47078
ENSMUSG00000091378
Gm4219
predicted gene 4219
-0.8095
0.0003
47077
ENSMUSG00000086725
A630052C17Rik
RIKEN cDNA A630052C17 gene
-0.8095
0.0003
47076
ENSMUSG00000078915
Hsp25-ps1
heat shock protein 25, pseudogene 1
-0.8095
0.0003
47075
ENSMUSG00000063406
Tmed5
transmembrane p24 trafficking protein 5
-0.8095
0.0003
47074
ENSMUSG00000054000
Tusc1
tumor suppressor candidate 1
-0.8095
0.0003
47073
ENSMUSG00000042541
Sem1
SEM1, 26S proteasome complex subunit
-0.8095
0.0003
47072
ENSMUSG00000040022
Rab11fip2
RAB11 family interacting protein 2 (class I)
-0.8095
0.0003
10
ENSMUSG00000082886
Gm5386
predicted pseudogene 5386
3.1699
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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