SHOGoiN Cell Methylome: GSM1370572
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370572 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M42 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000069390 | Olfr707 | olfactory receptor 707 | 5.9887 | 0.0000 |
| 2 | ENSMUSG00000109539 | Gm44667 | predicted gene 44667 | 5.7549 | 0.0000 |
| 3 | ENSMUSG00000047419 | Cmya5 | cardiomyopathy associated 5 | 4.5850 | 0.0000 |
| 4 | ENSMUSG00000102569 | Gm37041 | predicted gene, 37041 | 4.0875 | 0.0000 |
| 5 | ENSMUSG00000109354 | Olfr706 | olfactory receptor 706 | 3.7868 | 0.0000 |
| 6 | ENSMUSG00000075137 | Olfr1163 | olfactory receptor 1163 | 3.5850 | 0.0003 |
| 7 | ENSMUSG00000089678 | Agxt2 | alanine-glyoxylate aminotransferase 2 | 3.5850 | 0.0003 |
| 8 | ENSMUSG00000103465 | Gm37617 | predicted gene, 37617 | 3.3219 | 0.0014 |
| 9 | ENSMUSG00000110158 | Gm45690 | predicted gene 45690 | 3.3219 | 0.0014 |
| 10 | ENSMUSG00000082886 | Gm5386 | predicted pseudogene 5386 | 3.1699 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000065676 | Snord42b | small nucleolar RNA, C/D box 42B | -1.5569 | 0.0000 |
| 50853 | ENSMUSG00000106475 | Gm43011 | predicted gene 43011 | -1.5531 | 0.0000 |
| 50852 | ENSMUSG00000096932 | 5033403F01Rik | RIKEN cDNA 5033403F01 gene | -1.5487 | 0.0000 |
| 50851 | ENSMUSG00000021432 | Slc35b3 | solute carrier family 35, member B3 | -1.5487 | 0.0000 |
| 50850 | ENSMUSG00000008384 | Sertad1 | SERTA domain containing 1 | -1.5411 | 0.0000 |
| 50849 | ENSMUSG00000073542 | Cep76 | centrosomal protein 76 | -1.5400 | 0.0000 |
| 50848 | ENSMUSG00000014426 | Map3k4 | mitogen-activated protein kinase kinase kinase 4 | -1.5337 | 0.0000 |
| 50847 | ENSMUSG00000021690 | Jmy | junction-mediating and regulatory protein | -1.5333 | 0.0000 |
| 50846 | ENSMUSG00000025939 | Ube2w | ubiquitin-conjugating enzyme E2W (putative) | -1.5331 | 0.0000 |
| 50845 | ENSMUSG00000080006 | Rps19-ps7 | ribosomal protein S19, pseudogene 7 | -1.5284 | 0.0000 |
