SHOGoiN Cell Methylome: GSM1370573

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370573


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M43Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109539 Gm44667 predicted gene 44667 6.5546 0.0000
2 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 5.2095 0.0000
3 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 5.2095 0.0000
4 ENSMUSG00000101818 Gm28269 predicted gene 28269 4.5850 0.0000
5 ENSMUSG00000102569 Gm37041 predicted gene, 37041 4.4085 0.0000
6 ENSMUSG00000099582 Gm29014 predicted gene 29014 3.7004 0.0000
7 ENSMUSG00000076481 Trbv30 T cell receptor beta, variable 30 3.3219 0.0005
8 ENSMUSG00000101242 Gm28319 predicted gene 28319 3.2696 0.0000
9 ENSMUSG00000105290 Gm43528 predicted gene 43528 3.0646 0.0000
10 ENSMUSG00000043865 Tas2r118 taste receptor, type 2, member 118 3.0000 0.0025

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000062588 Gm6104 predicted gene 6104 -1.5850 0.5112
50853 ENSMUSG00000059173 Pde1a phosphodiesterase 1A, calmodulin-dependent -1.5850 0.5112
50852 ENSMUSG00000057715 A830018L16Rik RIKEN cDNA A830018L16 gene -1.5850 0.5112
50851 ENSMUSG00000055125 M5C1000I18Rik RIKEN cDNA M5C1000I18 gene -1.5850 0.5112
50850 ENSMUSG00000055030 Sprr2e small proline-rich protein 2E -1.5850 0.5112
50849 ENSMUSG00000053228 Ceacam3 carcinoembryonic antigen-related cell adhesion molecule 3 -1.5850 0.5112
50848 ENSMUSG00000049128 Ivl involucrin -1.5850 0.5112
50847 ENSMUSG00000047370 Gm7367 predicted pseudogene 7367 -1.5850 0.5112
50846 ENSMUSG00000047216 Cdh19 cadherin 19, type 2 -1.5850 0.5112
50845 ENSMUSG00000044550 Tceal3 transcription elongation factor A (SII)-like 3 -1.5850 0.5112

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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