Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370573

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370573


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M43Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000109539 Gm44667 predicted gene 44667 6.5546 0.0000
2 ENSMUSG00000081531 Vmn1r-ps113 vomeronasal 1 receptor, pseudogene 113 5.2095 0.0000
3 ENSMUSG00000082540 Vmn1r-ps112 vomeronasal 1 receptor, pseudogene 112 5.2095 0.0000
4 ENSMUSG00000101818 Gm28269 predicted gene 28269 4.5850 0.0000
5 ENSMUSG00000102569 Gm37041 predicted gene, 37041 4.4085 0.0000
6 ENSMUSG00000099582 Gm29014 predicted gene 29014 3.7004 0.0000
7 ENSMUSG00000076481 Trbv30 T cell receptor beta, variable 30 3.3219 0.0005
8 ENSMUSG00000101242 Gm28319 predicted gene 28319 3.2696 0.0000
9 ENSMUSG00000105290 Gm43528 predicted gene 43528 3.0646 0.0000
10 ENSMUSG00000043865 Tas2r118 taste receptor, type 2, member 118 3.0000 0.0025

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000097561 4632411P08Rik RIKEN cDNA 4632411P08 gene -0.9169 0.0000
47080 ENSMUSG00000019845 Tube1 tubulin, epsilon 1 -0.9168 0.0000
47079 ENSMUSG00000020205 Phlda1 pleckstrin homology like domain, family A, member 1 -0.9168 0.0000
47078 ENSMUSG00000000690 Hoxb6 homeobox B6 -0.9168 0.0000
47077 ENSMUSG00000048142 Nat8l N-acetyltransferase 8-like -0.9168 0.0000
47076 ENSMUSG00000032033 Barx2 BarH-like homeobox 2 -0.9168 0.0000
47075 ENSMUSG00000052423 B4galt3 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3 -0.9167 0.0000
47073 ENSMUSG00000085829 Gm4285 predicted gene 4285 -0.9167 0.0001
47072 ENSMUSG00000084514 Mir1893 microRNA 1893 -0.9167 0.0000
10 ENSMUSG00000043865 Tas2r118 taste receptor, type 2, member 118 3.0000 0.0025

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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