Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1370574

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370574


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M44Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 4.6439 0.0000
2 ENSMUSG00000084441 Gm26255 predicted gene, 26255 3.8074 0.0000
3 ENSMUSG00000054641 Mmrn1 multimerin 1 3.1699 0.0020
4 ENSMUSG00000078784 Rbis ribosomal biogenesis factor 3.1699 0.0000
5 ENSMUSG00000089309 Gm24838 predicted gene, 24838 3.0222 0.0000
6 ENSMUSG00000059106 Olfr961 olfactory receptor 961 2.8074 0.0096
7 ENSMUSG00000103667 Ighv1-8 immunoglobulin heavy variable V1-8 2.8074 0.0096
8 ENSMUSG00000104152 Ighv10-4 immunoglobulin heavy variable V10-4 2.8074 0.0096
9 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 2.7740 0.0000
10 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.6610 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000107798 Gm44064 predicted gene, 44064 -0.9070 0.0000
47080 ENSMUSG00000045414 Dipk2a divergent protein kinase domain 2A -0.9070 0.0000
47079 ENSMUSG00000073982 Rhog ras homolog family member G -0.9068 0.0000
47078 ENSMUSG00000064030 Pym1 PYM homolog 1, exon junction complex associated factor -0.9068 0.0000
47077 ENSMUSG00000041235 Chd7 chromodomain helicase DNA binding protein 7 -0.9067 0.0000
47076 ENSMUSG00000040128 Pnrc1 proline-rich nuclear receptor coactivator 1 -0.9067 0.0000
47075 ENSMUSG00000086522 Gm4473 predicted gene 4473 -0.9067 0.0000
47074 ENSMUSG00000071719 Tmem28 transmembrane protein 28 -0.9066 0.0000
47073 ENSMUSG00000038894 Irs2 insulin receptor substrate 2 -0.9066 0.0000
47072 ENSMUSG00000097615 Gm2061 predicted gene 2061 -0.9062 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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