SHOGoiN Cell Methylome: GSM1370574

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1370574


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7020001000000000000000-715Sequence Read ArchiveSRP041257SRP041257_M44Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000082886 Gm5386 predicted pseudogene 5386 4.6439 0.0000
2 ENSMUSG00000084441 Gm26255 predicted gene, 26255 3.8074 0.0000
3 ENSMUSG00000054641 Mmrn1 multimerin 1 3.1699 0.0020
4 ENSMUSG00000078784 1810022K09Rik RIKEN cDNA 1810022K09 gene 3.1699 0.0000
5 ENSMUSG00000089309 Gm24838 predicted gene, 24838 3.0222 0.0000
6 ENSMUSG00000059106 Olfr961 olfactory receptor 961 2.8074 0.0096
7 ENSMUSG00000103667 Ighv1-8 immunoglobulin heavy variable V1-8 2.8074 0.0096
8 ENSMUSG00000104152 Ighv10-4 immunoglobulin heavy variable V10-4 2.8074 0.0096
9 ENSMUSG00000040370 Etfrf1 electron transfer flavoprotein regulatory factor 1 2.7740 0.0000
10 ENSMUSG00000093385 A330044P14Rik RIKEN cDNA A330044P14 gene 2.6610 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000086413 Gm12415 predicted gene 12415 -1.5850 0.5031
50853 ENSMUSG00000086188 Gm15169 predicted gene 15169 -1.5850 0.5031
50852 ENSMUSG00000084731 Gm25806 predicted gene, 25806 -1.5850 0.5031
50851 ENSMUSG00000084704 n-R5s216 nuclear encoded rRNA 5S 216 -1.5850 0.5031
50850 ENSMUSG00000084195 Gm15372 predicted gene 15372 -1.5850 0.5031
50849 ENSMUSG00000083551 Gm14516 predicted gene 14516 -1.5850 0.1296
50848 ENSMUSG00000083278 Gm14589 predicted gene 14589 -1.5850 0.5031
50847 ENSMUSG00000082652 Gm14725 predicted gene 14725 -1.5850 0.5031
50846 ENSMUSG00000082347 Gm15036 predicted gene 15036 -1.5850 0.5031
50845 ENSMUSG00000082229 Nap1l2 nucleosome assembly protein 1-like 2 -1.5850 0.1296

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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