SHOGoiN Cell Methylome: GSM1370574
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1370574 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP041257 | SRP041257_M44 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000082886 | Gm5386 | predicted pseudogene 5386 | 4.6439 | 0.0000 |
| 2 | ENSMUSG00000084441 | Gm26255 | predicted gene, 26255 | 3.8074 | 0.0000 |
| 3 | ENSMUSG00000054641 | Mmrn1 | multimerin 1 | 3.1699 | 0.0020 |
| 4 | ENSMUSG00000078784 | 1810022K09Rik | RIKEN cDNA 1810022K09 gene | 3.1699 | 0.0000 |
| 5 | ENSMUSG00000089309 | Gm24838 | predicted gene, 24838 | 3.0222 | 0.0000 |
| 6 | ENSMUSG00000059106 | Olfr961 | olfactory receptor 961 | 2.8074 | 0.0096 |
| 7 | ENSMUSG00000103667 | Ighv1-8 | immunoglobulin heavy variable V1-8 | 2.8074 | 0.0096 |
| 8 | ENSMUSG00000104152 | Ighv10-4 | immunoglobulin heavy variable V10-4 | 2.8074 | 0.0096 |
| 9 | ENSMUSG00000040370 | Etfrf1 | electron transfer flavoprotein regulatory factor 1 | 2.7740 | 0.0000 |
| 10 | ENSMUSG00000093385 | A330044P14Rik | RIKEN cDNA A330044P14 gene | 2.6610 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000086413 | Gm12415 | predicted gene 12415 | -1.5850 | 0.5031 |
| 50853 | ENSMUSG00000086188 | Gm15169 | predicted gene 15169 | -1.5850 | 0.5031 |
| 50852 | ENSMUSG00000084731 | Gm25806 | predicted gene, 25806 | -1.5850 | 0.5031 |
| 50851 | ENSMUSG00000084704 | n-R5s216 | nuclear encoded rRNA 5S 216 | -1.5850 | 0.5031 |
| 50850 | ENSMUSG00000084195 | Gm15372 | predicted gene 15372 | -1.5850 | 0.5031 |
| 50849 | ENSMUSG00000083551 | Gm14516 | predicted gene 14516 | -1.5850 | 0.1296 |
| 50848 | ENSMUSG00000083278 | Gm14589 | predicted gene 14589 | -1.5850 | 0.5031 |
| 50847 | ENSMUSG00000082652 | Gm14725 | predicted gene 14725 | -1.5850 | 0.5031 |
| 50846 | ENSMUSG00000082347 | Gm15036 | predicted gene 15036 | -1.5850 | 0.5031 |
| 50845 | ENSMUSG00000082229 | Nap1l2 | nucleosome assembly protein 1-like 2 | -1.5850 | 0.1296 |
