Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1370574
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1370574
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP041257
SRP041257_M44
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000082886
Gm5386
predicted pseudogene 5386
4.6439
0.0000
2
ENSMUSG00000084441
Gm26255
predicted gene, 26255
3.8074
0.0000
3
ENSMUSG00000054641
Mmrn1
multimerin 1
3.1699
0.0020
4
ENSMUSG00000078784
Rbis
ribosomal biogenesis factor
3.1699
0.0000
5
ENSMUSG00000089309
Gm24838
predicted gene, 24838
3.0222
0.0000
6
ENSMUSG00000059106
Olfr961
olfactory receptor 961
2.8074
0.0096
7
ENSMUSG00000103667
Ighv1-8
immunoglobulin heavy variable V1-8
2.8074
0.0096
8
ENSMUSG00000104152
Ighv10-4
immunoglobulin heavy variable V10-4
2.8074
0.0096
9
ENSMUSG00000040370
Etfrf1
electron transfer flavoprotein regulatory factor 1
2.7740
0.0000
10
ENSMUSG00000093385
A330044P14Rik
RIKEN cDNA A330044P14 gene
2.6610
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000107798
Gm44064
predicted gene, 44064
-0.9070
0.0000
47080
ENSMUSG00000045414
Dipk2a
divergent protein kinase domain 2A
-0.9070
0.0000
47079
ENSMUSG00000073982
Rhog
ras homolog family member G
-0.9068
0.0000
47078
ENSMUSG00000064030
Pym1
PYM homolog 1, exon junction complex associated factor
-0.9068
0.0000
47077
ENSMUSG00000041235
Chd7
chromodomain helicase DNA binding protein 7
-0.9067
0.0000
47076
ENSMUSG00000040128
Pnrc1
proline-rich nuclear receptor coactivator 1
-0.9067
0.0000
47075
ENSMUSG00000086522
Gm4473
predicted gene 4473
-0.9067
0.0000
47074
ENSMUSG00000071719
Tmem28
transmembrane protein 28
-0.9066
0.0000
47073
ENSMUSG00000038894
Irs2
insulin receptor substrate 2
-0.9066
0.0000
47072
ENSMUSG00000097615
Gm2061
predicted gene 2061
-0.9062
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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