Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1413827
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1413827
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP041257
SRP041257_M45
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Secondary oocyte (Ovarian follicle)
Mouse
Genitalia
Bisulfite-Seq (WGBS, deeper sequencing)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000103382
Gm37755
predicted gene, 37755
3.5090
0.0000
2
ENSMUSG00000073916
Olfr669
olfactory receptor 669
3.1699
0.0000
3
ENSMUSG00000075119
Olfr1197
olfactory receptor 1197
3.1699
0.0000
4
ENSMUSG00000081487
Gm13689
predicted gene 13689
3.1699
0.0000
5
ENSMUSG00000088157
Gm26351
predicted gene, 26351
3.1699
0.0000
6
ENSMUSG00000103377
Gm37180
predicted gene, 37180
3.1699
0.0000
7
ENSMUSG00000089563
Gm24667
predicted gene, 24667
3.0850
0.0000
8
ENSMUSG00000100672
Gm28404
predicted gene 28404
3.0850
0.0000
9
ENSMUSG00000063656
Gm10135
predicted gene 10135
3.0112
0.0000
47072
ENSMUSG00000091116
Gm7991
predicted gene 7991
-1.9077
0.0173
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000112468
Gm47720
predicted gene, 47720
-1.9086
0.0000
47080
ENSMUSG00000108127
Gm12845
predicted gene 12845
-1.9084
0.0000
47079
ENSMUSG00000082512
Gm13937
predicted gene 13937
-1.9082
0.0001
47078
ENSMUSG00000041120
Nbl1
NBL1, DAN family BMP antagonist
-1.9082
0.0000
47077
ENSMUSG00000089484
Gm24735
predicted gene, 24735
-1.9081
0.0000
47076
ENSMUSG00000108848
4933430N04Rik
RIKEN cDNA 4933430N04 gene
-1.9080
0.0001
47075
ENSMUSG00000097628
Gm2383
predicted gene 2383
-1.9080
0.0209
47074
ENSMUSG00000096573
1700009J07Rik
RIKEN cDNA 1700009J07 gene
-1.9079
0.0000
47073
ENSMUSG00000063704
Mapk15
mitogen-activated protein kinase 15
-1.9078
0.0000
47072
ENSMUSG00000091116
Gm7991
predicted gene 7991
-1.9077
0.0173
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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