SHOGoiN Cell Methylome: GSM1413828
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1413828 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP041257 | SRP041257_M46 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity | Methylome | Secondary oocyte (Ovarian follicle) | Mouse | Genitalia | Bisulfite-Seq (WGBS, deeper sequencing) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000073448 | Gm10509 | predicted gene 10509 | 3.1699 | 0.0000 |
| 2 | ENSMUSG00000107683 | Gm44139 | predicted gene, 44139 | 3.1699 | 0.0000 |
| 3 | ENSMUSG00000108250 | Tas2r111-ps2 | taste receptor, type 2, member 111, pseudogene 2 | 3.1699 | 0.0000 |
| 4 | ENSMUSG00000092199 | Gm18358 | predicted gene, 18358 | 2.8906 | 0.0000 |
| 5 | ENSMUSG00000079271 | 1700049E17Rik1 | RIKEN cDNA 1700049E17 gene, gene 1 | 2.8219 | 0.0000 |
| 6 | ENSMUSG00000076958 | Gm24935 | predicted gene, 24935 | 2.8074 | 0.0000 |
| 7 | ENSMUSG00000079521 | Gm5938 | predicted gene 5938 | 2.8074 | 0.0000 |
| 8 | ENSMUSG00000097966 | Gm9423 | predicted gene 9423 | 2.8074 | 0.0000 |
| 9 | ENSMUSG00000108164 | Gm43899 | predicted gene, 43899 | 2.8074 | 0.0000 |
| 10 | ENSMUSG00000108544 | Cyp2b26-ps | cytochrome P450, family 2, subfamily b, polypeptide 26, pseudogene | 2.8074 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000107549 | Gm43961 | predicted gene, 43961 | -2.2278 | 0.0000 |
| 50853 | ENSMUSG00000074934 | Grem1 | gremlin 1, DAN family BMP antagonist | -2.2272 | 0.0000 |
| 50852 | ENSMUSG00000058446 | Znrf2 | zinc and ring finger 2 | -2.2270 | 0.0000 |
| 50851 | ENSMUSG00000097558 | Gm26902 | predicted gene, 26902 | -2.2260 | 0.0000 |
| 50850 | ENSMUSG00000096945 | Gm26546 | predicted gene, 26546 | -2.2236 | 0.0000 |
| 50849 | ENSMUSG00000112069 | Gm9476 | predicted gene 9476 | -2.2233 | 0.0140 |
| 50848 | ENSMUSG00000020396 | Nefh | neurofilament, heavy polypeptide | -2.2219 | 0.0000 |
| 50847 | ENSMUSG00000087159 | Gm15246 | predicted gene 15246 | -2.2219 | 0.0000 |
| 50846 | ENSMUSG00000112640 | Gm32687 | predicted gene, 32687 | -2.2212 | 0.0000 |
| 50845 | ENSMUSG00000034435 | Tmem30b | transmembrane protein 30B | -2.2206 | 0.0000 |
