Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1413828
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1413828
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP041257
SRP041257_M46
Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity
Methylome
Secondary oocyte (Ovarian follicle)
Mouse
Genitalia
Bisulfite-Seq (WGBS, deeper sequencing)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000073448
Gm10509
predicted gene 10509
3.1699
0.0000
2
ENSMUSG00000107683
Gm44139
predicted gene, 44139
3.1699
0.0000
3
ENSMUSG00000108250
Tas2r111-ps2
taste receptor, type 2, member 111, pseudogene 2
3.1699
0.0000
4
ENSMUSG00000092199
Gm18358
predicted gene, 18358
2.8906
0.0000
5
ENSMUSG00000079271
1700049E17Rik1
RIKEN cDNA 1700049E17 gene, gene 1
2.8219
0.0000
7
ENSMUSG00000079521
Gm5938
predicted gene 5938
2.8074
0.0000
8
ENSMUSG00000097966
Gm9423
predicted gene 9423
2.8074
0.0000
9
ENSMUSG00000108164
Gm43899
predicted gene, 43899
2.8074
0.0000
10
ENSMUSG00000108544
Cyp2b26-ps
cytochrome P450, family 2, subfamily b, polypeptide 26, pseudogene
2.8074
0.0000
47072
ENSMUSG00000112906
Gm18189
predicted gene, 18189
-1.7211
0.0053
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000030120
Mlf2
myeloid leukemia factor 2
-1.7215
0.0000
47080
ENSMUSG00000022221
Ripk3
receptor-interacting serine-threonine kinase 3
-1.7215
0.0000
47079
ENSMUSG00000086257
4930548K13Rik
RIKEN cDNA 4930548K13 gene
-1.7213
0.0138
47078
ENSMUSG00000048764
Tmprss11f
transmembrane protease, serine 11f
-1.7213
0.0138
47077
ENSMUSG00000069540
Gm4925
predicted gene 4925
-1.7213
0.0000
47076
ENSMUSG00000108772
Gm6063
predicted gene 6063
-1.7212
0.0000
47075
ENSMUSG00000096107
Gm16505
predicted gene 16505
-1.7211
0.0000
47074
ENSMUSG00000112494
4930444K16Rik
RIKEN cDNA 4930444K16 gene
-1.7211
0.0000
47073
ENSMUSG00000049657
Zbtb5
zinc finger and BTB domain containing 5
-1.7211
0.0000
47072
ENSMUSG00000112906
Gm18189
predicted gene, 18189
-1.7211
0.0053
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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