Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1413828

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1413828


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M46Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS, deeper sequencing)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000073448 Gm10509 predicted gene 10509 3.1699 0.0000
2 ENSMUSG00000107683 Gm44139 predicted gene, 44139 3.1699 0.0000
3 ENSMUSG00000108250 Tas2r111-ps2 taste receptor, type 2, member 111, pseudogene 2 3.1699 0.0000
4 ENSMUSG00000092199 Gm18358 predicted gene, 18358 2.8906 0.0000
5 ENSMUSG00000079271 1700049E17Rik1 RIKEN cDNA 1700049E17 gene, gene 1 2.8219 0.0000
7 ENSMUSG00000079521 Gm5938 predicted gene 5938 2.8074 0.0000
8 ENSMUSG00000097966 Gm9423 predicted gene 9423 2.8074 0.0000
9 ENSMUSG00000108164 Gm43899 predicted gene, 43899 2.8074 0.0000
10 ENSMUSG00000108544 Cyp2b26-ps cytochrome P450, family 2, subfamily b, polypeptide 26, pseudogene 2.8074 0.0000
47072 ENSMUSG00000112906 Gm18189 predicted gene, 18189 -1.7211 0.0053

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000030120 Mlf2 myeloid leukemia factor 2 -1.7215 0.0000
47080 ENSMUSG00000022221 Ripk3 receptor-interacting serine-threonine kinase 3 -1.7215 0.0000
47079 ENSMUSG00000086257 4930548K13Rik RIKEN cDNA 4930548K13 gene -1.7213 0.0138
47078 ENSMUSG00000048764 Tmprss11f transmembrane protease, serine 11f -1.7213 0.0138
47077 ENSMUSG00000069540 Gm4925 predicted gene 4925 -1.7213 0.0000
47076 ENSMUSG00000108772 Gm6063 predicted gene 6063 -1.7212 0.0000
47075 ENSMUSG00000096107 Gm16505 predicted gene 16505 -1.7211 0.0000
47074 ENSMUSG00000112494 4930444K16Rik RIKEN cDNA 4930444K16 gene -1.7211 0.0000
47073 ENSMUSG00000049657 Zbtb5 zinc finger and BTB domain containing 5 -1.7211 0.0000
47072 ENSMUSG00000112906 Gm18189 predicted gene, 18189 -1.7211 0.0053

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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