SHOGoiN Cell Methylome: GSM1413828

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1413828


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5030203000000000000000-761Sequence Read ArchiveSRP041257SRP041257_M46Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic HeterogeneityMethylomeSecondary oocyte (Ovarian follicle)MouseGenitaliaBisulfite-Seq (WGBS, deeper sequencing)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000073448 Gm10509 predicted gene 10509 3.1699 0.0000
2 ENSMUSG00000107683 Gm44139 predicted gene, 44139 3.1699 0.0000
3 ENSMUSG00000108250 Tas2r111-ps2 taste receptor, type 2, member 111, pseudogene 2 3.1699 0.0000
4 ENSMUSG00000092199 Gm18358 predicted gene, 18358 2.8906 0.0000
5 ENSMUSG00000079271 1700049E17Rik1 RIKEN cDNA 1700049E17 gene, gene 1 2.8219 0.0000
6 ENSMUSG00000076958 Gm24935 predicted gene, 24935 2.8074 0.0000
7 ENSMUSG00000079521 Gm5938 predicted gene 5938 2.8074 0.0000
8 ENSMUSG00000097966 Gm9423 predicted gene 9423 2.8074 0.0000
9 ENSMUSG00000108164 Gm43899 predicted gene, 43899 2.8074 0.0000
10 ENSMUSG00000108544 Cyp2b26-ps cytochrome P450, family 2, subfamily b, polypeptide 26, pseudogene 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000107549 Gm43961 predicted gene, 43961 -2.2278 0.0000
50853 ENSMUSG00000074934 Grem1 gremlin 1, DAN family BMP antagonist -2.2272 0.0000
50852 ENSMUSG00000058446 Znrf2 zinc and ring finger 2 -2.2270 0.0000
50851 ENSMUSG00000097558 Gm26902 predicted gene, 26902 -2.2260 0.0000
50850 ENSMUSG00000096945 Gm26546 predicted gene, 26546 -2.2236 0.0000
50849 ENSMUSG00000112069 Gm9476 predicted gene 9476 -2.2233 0.0140
50848 ENSMUSG00000020396 Nefh neurofilament, heavy polypeptide -2.2219 0.0000
50847 ENSMUSG00000087159 Gm15246 predicted gene 15246 -2.2219 0.0000
50846 ENSMUSG00000112640 Gm32687 predicted gene, 32687 -2.2212 0.0000
50845 ENSMUSG00000034435 Tmem30b transmembrane protein 30B -2.2206 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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