Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849305

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849305


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M1Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000227279 novel transcript, antisense to CDH2 5.7814 0.0000
2 ENSG00000201826 RNU6-867P RNA, U6 small nuclear 867, pseudogene 5.6724 0.0000
3 ENSG00000251958 RNU6-1102P RNA, U6 small nuclear 1102, pseudogene 5.6147 0.0000
4 ENSG00000271130 IGHV3OR16-8 immunoglobulin heavy variable 3/OR16-8 (non-functional) 5.3576 0.0000
5 ENSG00000202428 RNU6-108P RNA, U6 small nuclear 108, pseudogene 5.2990 0.0000
6 ENSG00000273951 novel transcript, sense intronic to CHD6 5.2854 0.0000
7 ENSG00000264693 novel transcript 5.1213 0.0000
8 ENSG00000251986 Y RNA 5.1142 0.0000
9 ENSG00000248308 UBX domain protein 2A (UBXN2A) pseudogene 5.0444 0.0000
10 ENSG00000201573 Y RNA 5.0443 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000274712 bromodomain PHD finger transcription factor (BPTF) pseudogene -2.6506 0.0000
63127 ENSG00000271656 ribosomal protein L17 (RPL17) pseudogene -2.6493 0.0009
63126 ENSG00000178229 ZNF543 zinc finger protein 543 -2.6475 0.0000
63125 ENSG00000121851 POLR3GL RNA polymerase III subunit GL -2.6458 0.0000
63124 ENSG00000155961 RAB39B RAB39B, member RAS oncogene family -2.6458 0.0002
63123 ENSG00000276670 NA -2.6457 0.0000
63122 ENSG00000252988 RNU6-111P RNA, U6 small nuclear 111, pseudogene -2.6450 0.0000
63121 ENSG00000255618 LINC02440 long intergenic non-protein coding RNA 2440 -2.6442 0.0000
63120 ENSG00000212466 RNU6-952P RNA, U6 small nuclear 952, pseudogene -2.6436 0.0000
63119 ENSG00000172818 OVOL1 ovo like transcriptional repressor 1 -2.6428 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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