SHOGoiN Cell Methylome: GSM1849305

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849305


Profile download
5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M1Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000227279 novel transcript, antisense to CDH2 5.7814 0.0000
2 ENSG00000201826 RNU6-867P RNA, U6 small nuclear 867, pseudogene 5.6724 0.0000
3 ENSG00000251958 RNU6-1102P RNA, U6 small nuclear 1102, pseudogene 5.6147 0.0000
4 ENSG00000271130 IGHV3OR16-8 immunoglobulin heavy variable 3/OR16-8 (non-functional) 5.3576 0.0000
5 ENSG00000202428 RNU6-108P RNA, U6 small nuclear 108, pseudogene 5.2990 0.0000
6 ENSG00000273951 novel transcript, sense intronic to CHD6 5.2854 0.0000
7 ENSG00000264693 novel transcript 5.1213 0.0000
8 ENSG00000251986 NA 5.1142 0.0000
9 ENSG00000248308 UBX domain protein 2A (UBXN2A) pseudogene 5.0444 0.0000
10 ENSG00000201573 NA 5.0443 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000254806 SYS1-DBNDD2 SYS1-DBNDD2 readthrough (NMD candidate) -2.8267 0.0000
63340 ENSG00000212327 RNU6-882P RNA, U6 small nuclear 882, pseudogene -2.8266 0.0000
63339 ENSG00000267543 novel transcript, sense intronic to PRCD -2.8263 0.0000
63338 ENSG00000271302 serine threonine kinase 39 (STK39) pseudogene -2.8241 0.0001
63337 ENSG00000145337 PYURF PIGY upstream reading frame -2.8194 0.0282
63336 ENSG00000255162 ankyrin repeat domain 33B (ANKRD33B ) pseudogene -2.8171 0.0004
63335 ENSG00000196865 NHLRC2 NHL repeat containing 2 -2.8129 0.0000
63334 ENSG00000128714 HOXD13 homeobox D13 -2.8115 0.0000
63333 ENSG00000124003 MOGAT1 monoacylglycerol O-acyltransferase 1 -2.8082 0.0000
63332 ENSG00000240542 KRTAP9-1 keratin associated protein 9-1 -2.8075 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...