Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM1849306
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1849306
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP062328
SRP062328_M2
Human oocyte DNA methylome
Methylome
Oocyte (mature metaphase (MII) stage )
Human
Genitalia
Bisulfite-Seq (WGBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000260405
LYR motif containing 2 (LYRM2) pseudogene
5.2854
0.0000
2
ENSG00000260675
TCERG1P2
TCERG1 pseudogene 2
5.2854
0.0000
3
ENSG00000205129
C4orf47
chromosome 4 open reading frame 47
4.7004
0.0000
4
ENSG00000223676
RPL34P26
ribosomal protein L34 pseudogene 26
4.7004
0.0000
5
ENSG00000250711
PRELID3BP7
PRELI domain containing 3B pseudogene 7
4.7004
0.0000
6
ENSG00000280283
TEC
4.6251
0.0000
7
ENSG00000252184
RNU2-10P
RNA, U2 small nuclear 10, pseudogene
4.6144
0.0000
8
ENSG00000267070
novel transcript
4.5236
0.0000
9
ENSG00000273623
NA
4.5236
0.0000
10
ENSG00000152433
ZNF547
zinc finger protein 547
4.4594
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000229682
ribosomal protein S26 (RPS26) pseudogene
-3.0813
0.1749
63127
ENSG00000250821
EXOC1L
exocyst complex component 1 like
-3.0803
0.4129
63126
ENSG00000227645
RPL7P54
ribosomal protein L7 pseudogene 54
-3.0803
0.7215
63125
ENSG00000231501
MTND4LP1
MT-ND4L pseudogene 1
-3.0796
0.0000
63124
ENSG00000227117
HORMAD2-AS1
HORMAD2 and MTMR3 antisense RNA 1
-3.0769
0.0155
63123
ENSG00000264316
MTCO3P13
MT-CO3 pseudogene 13
-3.0757
0.0000
63122
ENSG00000263483
MTATP6P3
MT-ATP6 pseudogene 3
-3.0757
0.0000
63121
ENSG00000095209
TMEM38B
transmembrane protein 38B
-3.0746
0.0002
63120
ENSG00000140832
MARVELD3
MARVEL domain containing 3
-3.0740
0.0023
63119
ENSG00000228974
S100 calcium binding protein A11 (S100A11) pseudogene
-3.0730
0.0146
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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