Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849306

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849306


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M2Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000260405 LYR motif containing 2 (LYRM2) pseudogene 5.2854 0.0000
2 ENSG00000260675 TCERG1P2 TCERG1 pseudogene 2 5.2854 0.0000
3 ENSG00000205129 C4orf47 chromosome 4 open reading frame 47 4.7004 0.0000
4 ENSG00000223676 RPL34P26 ribosomal protein L34 pseudogene 26 4.7004 0.0000
5 ENSG00000250711 PRELID3BP7 PRELI domain containing 3B pseudogene 7 4.7004 0.0000
6 ENSG00000280283 TEC 4.6251 0.0000
7 ENSG00000252184 RNU2-10P RNA, U2 small nuclear 10, pseudogene 4.6144 0.0000
8 ENSG00000267070 novel transcript 4.5236 0.0000
9 ENSG00000273623 NA 4.5236 0.0000
10 ENSG00000152433 ZNF547 zinc finger protein 547 4.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000229682 ribosomal protein S26 (RPS26) pseudogene -3.0813 0.1749
63127 ENSG00000250821 EXOC1L exocyst complex component 1 like -3.0803 0.4129
63126 ENSG00000227645 RPL7P54 ribosomal protein L7 pseudogene 54 -3.0803 0.7215
63125 ENSG00000231501 MTND4LP1 MT-ND4L pseudogene 1 -3.0796 0.0000
63124 ENSG00000227117 HORMAD2-AS1 HORMAD2 and MTMR3 antisense RNA 1 -3.0769 0.0155
63123 ENSG00000264316 MTCO3P13 MT-CO3 pseudogene 13 -3.0757 0.0000
63122 ENSG00000263483 MTATP6P3 MT-ATP6 pseudogene 3 -3.0757 0.0000
63121 ENSG00000095209 TMEM38B transmembrane protein 38B -3.0746 0.0002
63120 ENSG00000140832 MARVELD3 MARVEL domain containing 3 -3.0740 0.0023
63119 ENSG00000228974 S100 calcium binding protein A11 (S100A11) pseudogene -3.0730 0.0146

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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