SHOGoiN Cell Methylome: GSM1849306

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849306


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M2Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000260405 LYR motif containing 2 (LYRM2) pseudogene 5.2854 0.0000
2 ENSG00000260675 transcription elongation regulator 1 (TCERG1) pseudogene 5.2854 0.0000
3 ENSG00000205129 C4orf47 chromosome 4 open reading frame 47 4.7004 0.0000
4 ENSG00000223676 RPL34P26 ribosomal protein L34 pseudogene 26 4.7004 0.0000
5 ENSG00000250711 PRELID3BP7 PRELI domain containing 3B pseudogene 7 4.7004 0.0000
6 ENSG00000280283 TEC 4.6251 0.0000
7 ENSG00000252184 RNU2-10P RNA, U2 small nuclear 10, pseudogene 4.6144 0.0000
8 ENSG00000267070 novel transcript 4.5236 0.0000
9 ENSG00000273623 NA 4.5236 0.0000
10 ENSG00000152433 ZNF547 zinc finger protein 547 4.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000241231 novel transcript -3.1987 0.0503
63340 ENSG00000163202 LCE3D late cornified envelope 3D -3.1983 0.1125
63339 ENSG00000240173 RN7SL771P RNA, 7SL, cytoplasmic 771, pseudogene -3.1962 0.6292
63338 ENSG00000108528 SLC25A11 solute carrier family 25 member 11 -3.1962 0.6292
63337 ENSG00000284373 TAF11L2 TATA-box binding protein associated factor 11 like 2 -3.1933 0.1699
63336 ENSG00000163293 NIPAL1 NIPA like domain containing 1 -3.1902 0.0193
63335 ENSG00000281228 NA -3.1887 0.0623
63334 ENSG00000248796 MED15P8 mediator complex subunit 15 pseudogene 8 -3.1887 0.1099
63333 ENSG00000201529 NA -3.1887 0.0623
63332 ENSG00000081181 ARG2 arginase 2 -3.1887 0.0623

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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