SHOGoiN Cell Methylome: GSM1849306
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1849306 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP062328 | SRP062328_M2 | Human oocyte DNA methylome | Methylome | Oocyte (mature metaphase (MII) stage ) | Human | Genitalia | Bisulfite-Seq (WGBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000260405 | LYR motif containing 2 (LYRM2) pseudogene | 5.2854 | 0.0000 | |
| 2 | ENSG00000260675 | transcription elongation regulator 1 (TCERG1) pseudogene | 5.2854 | 0.0000 | |
| 3 | ENSG00000205129 | C4orf47 | chromosome 4 open reading frame 47 | 4.7004 | 0.0000 |
| 4 | ENSG00000223676 | RPL34P26 | ribosomal protein L34 pseudogene 26 | 4.7004 | 0.0000 |
| 5 | ENSG00000250711 | PRELID3BP7 | PRELI domain containing 3B pseudogene 7 | 4.7004 | 0.0000 |
| 6 | ENSG00000280283 | TEC | 4.6251 | 0.0000 | |
| 7 | ENSG00000252184 | RNU2-10P | RNA, U2 small nuclear 10, pseudogene | 4.6144 | 0.0000 |
| 8 | ENSG00000267070 | novel transcript | 4.5236 | 0.0000 | |
| 9 | ENSG00000273623 | NA | 4.5236 | 0.0000 | |
| 10 | ENSG00000152433 | ZNF547 | zinc finger protein 547 | 4.4594 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000241231 | novel transcript | -3.1987 | 0.0503 | |
| 63340 | ENSG00000163202 | LCE3D | late cornified envelope 3D | -3.1983 | 0.1125 |
| 63339 | ENSG00000240173 | RN7SL771P | RNA, 7SL, cytoplasmic 771, pseudogene | -3.1962 | 0.6292 |
| 63338 | ENSG00000108528 | SLC25A11 | solute carrier family 25 member 11 | -3.1962 | 0.6292 |
| 63337 | ENSG00000284373 | TAF11L2 | TATA-box binding protein associated factor 11 like 2 | -3.1933 | 0.1699 |
| 63336 | ENSG00000163293 | NIPAL1 | NIPA like domain containing 1 | -3.1902 | 0.0193 |
| 63335 | ENSG00000281228 | NA | -3.1887 | 0.0623 | |
| 63334 | ENSG00000248796 | MED15P8 | mediator complex subunit 15 pseudogene 8 | -3.1887 | 0.1099 |
| 63333 | ENSG00000201529 | NA | -3.1887 | 0.0623 | |
| 63332 | ENSG00000081181 | ARG2 | arginase 2 | -3.1887 | 0.0623 |
