Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1849307

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849307


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M3Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000142892 PIGK phosphatidylinositol glycan anchor biosynthesis class K 4.3923 0.0000
2 ENSG00000241891 RPL9P6 ribosomal protein L9 pseudogene 6 4.3219 0.0000
3 ENSG00000252290 NA 4.3219 0.0000
4 ENSG00000283698 VINAC1P vinculin/alpha-catenin family member 1, pseudogene 4.3219 0.0000
5 ENSG00000081248 CACNA1S calcium voltage-gated channel subunit alpha1 S 4.2479 0.0000
6 ENSG00000232337 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 (DDX18) pseudogene 4.2479 0.0000
7 ENSG00000234566 RPL7AP71 ribosomal protein L7a pseudogene 71 4.2479 0.0000
8 ENSG00000237870 novel transcript 4.1699 0.0000
9 ENSG00000250869 tigger transposable element derived 1 (TIGD1) pseudogene 4.1699 0.0000
10 ENSG00000231398 CD164 antigen, sialomucin (CD164) pseudogene 4.1424 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000227438 novel transcript -2.8083 0.0763
63127 ENSG00000081237 PTPRC protein tyrosine phosphatase receptor type C -2.8083 0.0763
63126 ENSG00000279143 TEC -2.8080 0.3020
63125 ENSG00000236036 LINC00445 long intergenic non-protein coding RNA 445 -2.8077 0.0094
63124 ENSG00000283188 MIR2052 microRNA 2052 -2.8074 1.0000
63123 ENSG00000282602 novel transcript -2.8074 1.0000
63122 ENSG00000282440 novel transcript -2.8074 0.6162
63121 ENSG00000281664 LINC00538 long intergenic non-protein coding RNA 538 -2.8074 1.0000
63120 ENSG00000280073 TEC -2.8074 0.2566
10 ENSG00000231398 CD164 antigen, sialomucin (CD164) pseudogene 4.1424 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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