SHOGoiN Cell Methylome: GSM1849307

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1849307


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M3Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000142892 PIGK phosphatidylinositol glycan anchor biosynthesis class K 4.3923 0.0000
2 ENSG00000241891 RPL9P6 ribosomal protein L9 pseudogene 6 4.3219 0.0000
3 ENSG00000252290 NA 4.3219 0.0000
4 ENSG00000283698 VINAC1P vinculin/alpha-catenin family member 1, pseudogene 4.3219 0.0000
5 ENSG00000081248 CACNA1S calcium voltage-gated channel subunit alpha1 S 4.2479 0.0000
6 ENSG00000232337 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 (DDX18) pseudogene 4.2479 0.0000
7 ENSG00000234566 RPL7AP71 ribosomal protein L7a pseudogene 71 4.2479 0.0000
8 ENSG00000237870 novel transcript 4.1699 0.0000
9 ENSG00000250869 tigger transposable element derived 1 (TIGD1) pseudogene 4.1699 0.0000
10 ENSG00000231398 CD164 antigen, sialomucin (CD164) pseudogene 4.1424 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000232780 GAPDHP74 glyceraldehyde-3-phosphate dehydrogenase pseudogene 74 -3.0000 1.0000
63340 ENSG00000232193 novel transcript -3.0000 0.1656
63339 ENSG00000232075 MRPL35P2 mitochondrial ribosomal protein L35 pseudogene 2 -3.0000 0.1656
63338 ENSG00000231681 novel transcript -3.0000 1.0000
63337 ENSG00000230156 LINC00443 long intergenic non-protein coding RNA 443 -3.0000 1.0000
63336 ENSG00000229390 MICD MHC class I polypeptide-related sequence D (pseudogene) -3.0000 0.6219
63335 ENSG00000229183 PGA4 pepsinogen 4, group I (pepsinogen A) -3.0000 1.0000
63334 ENSG00000227982 RPL7P30 ribosomal protein L7 pseudogene 30 -3.0000 1.0000
63333 ENSG00000227440 ATP5MC1P4 ATP synthase membrane subunit c locus 1 pseudogene 4 -3.0000 0.4094
63332 ENSG00000227243 SLAMF6P1 SLAM family member 6 pseudogene 1 -3.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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